Analysis of interatomic Contacts of Structural Units in PDB entry:
2VQJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VQJ entry

There is 1 chain in PDB entry 2VQJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 6GLU 407
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 2VQJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 19Right-handed 310
Helix 2
2
A
36 47Right-handed alpha
Helix 3
3
A
50 54Right-handed alpha
Helix 4
4
A
63 68Right-handed alpha
Helix 5
5
A
73 79Right-handed alpha
Helix 6
6
A
83 87Right-handed 310
Helix 7
7
A
91 101Right-handed alpha
Helix 8
8
A
117 143Right-handed alpha
Helix 9
9
A
173 185Right-handed alpha
Helix 10
10
A
200 208Right-handed alpha
Helix 11
12
A
238 242Right-handed 310
Helix 12
13
A
259 270Right-handed alpha
Helix 13
14
A
270 279Right-handed alpha
Helix 14
15
A
305 317Right-handed alpha
Helix 15
17
A
333 349Right-handed alpha
Helix 16
18
A
357 363Right-handed alpha
Helix 17
19
A
366 381Right-handed alpha
Helix 18
20
A
384 388Right-handed 310
Helix 19
21
A
397 404Right-handed alpha
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There are 2 sheets in PDB entry 2VQJ. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 58first strand
Strand 2
A
10 14parallel
Strand 3
A
148 151parallel
Strand 4
A
324 328parallel
Strand 5
A
282 287parallel
Strand 6
A
190 194parallel
Strand 7
A
213 220parallel
Strand 8
A
245 250parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 104first strand
Strand 2
A
110 112anti-parallel
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