Analysis of interatomic Contacts of Structural Units in PDB entry:
2VQR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VQR entry

There are 2 chains in PDB entry 2VQR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 2PRO 56
A
 GLY 58HIS 514
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 2VQR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 26Right-handed alpha
Helix 2
2
A
34 44Right-handed alpha
Helix 3
3
A
57 67Right-handed alpha
Helix 4
4
A
69 74Right-handed alpha
Helix 5
5
A
88 95Right-handed alpha
Helix 6
6
A
119 123Right-handed 310
Helix 7
7
A
139 141Right-handed 310
Helix 8
8
A
142 152Right-handed alpha
Helix 9
9
A
159 165Right-handed 310
Helix 10
10
A
183 186Right-handed 310
Helix 11
11
A
187 204Right-handed alpha
Helix 12
12
A
226 230Right-handed 310
Helix 13
13
A
232 236Right-handed 310
Helix 14
14
A
244 250Right-handed alpha
Helix 15
15
A
252 262Right-handed alpha
Helix 16
16
A
264 267Right-handed 310
Helix 17
17
A
275 278Right-handed 310
Helix 18
18
A
279 311Right-handed alpha
Helix 19
19
A
313 315Right-handed 310
Helix 20
20
A
330 334Right-handed 310
Helix 21
21
A
341 346Right-handed alpha
Helix 22
22
A
372 381Right-handed alpha
Helix 23
23
A
394 399Right-handed alpha
Helix 24
24
A
424 429Right-handed alpha
Helix 25
25
A
431 434Right-handed 310
Helix 26
26
A
473 475Right-handed 310
Helix 27
27
A
476 494Right-handed alpha
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There are 3 sheets in PDB entry 2VQR. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 137first strand
Strand 2
A
100 104parallel
Strand 3
A
209 213parallel
Strand 4
A
5 11parallel
Strand 5
A
317 323parallel
Strand 6
A
349 352anti-parallel
Strand 7
A
45 51anti-parallel
Strand 8
A
363 369parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 415first strand
Strand 2
A
436 441anti-parallel
Strand 3
A
445 450anti-parallel
Strand 4
A
456 459anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
502 503first strand
Strand 2
A
510 511anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il