Analysis of interatomic Contacts of Structural Units in PDB entry:
2VQW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VQW entry

There is 1 chain in PDB entry 2VQW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
G
 ARG 7ASN 406
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2VQW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
G
15 21Right-handed 310
Helix 2
2
G
35 48Right-handed alpha
Helix 3
3
G
63 68Right-handed alpha
Helix 4
4
G
72 81Right-handed alpha
Helix 5
5
G
122 143Right-handed alpha
Helix 6
6
G
172 184Right-handed alpha
Helix 7
7
G
200 208Right-handed alpha
Helix 8
8
G
222 225Right-handed 310
Helix 9
9
G
238 242Right-handed 310
Helix 10
10
G
259 270Right-handed alpha
Helix 11
11
G
270 279Right-handed alpha
Helix 12
12
G
305 318Right-handed alpha
Helix 13
13
G
333 350Right-handed alpha
Helix 14
14
G
357 363Right-handed alpha
Helix 15
15
G
366 381Right-handed alpha
Helix 16
16
G
397 406Right-handed alpha
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There are 2 sheets in PDB entry 2VQW. Click on sheet of interest to get list of strands forming it: GA, GB,

There are 8 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
55 57first strand
Strand 2
G
10 13parallel
Strand 3
G
148 151parallel
Strand 4
G
324 328parallel
Strand 5
G
282 287parallel
Strand 6
G
190 194parallel
Strand 7
G
213 220parallel
Strand 8
G
245 250parallel
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There are 2 strands in GB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
103 104first strand
Strand 2
G
110 111anti-parallel
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