Analysis of interatomic Contacts of Structural Units in PDB entry:
2VQX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VQX entry

There is 1 chain in PDB entry 2VQX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 6ALA 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 2VQX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 22Right-handed alpha
Helix 2
2
A
23 36Right-handed alpha
Helix 3
3
A
87 109Right-handed alpha
Helix 4
4
A
156 172Right-handed alpha
Helix 5
5
A
178 202Right-handed alpha
Helix 6
6
A
249 253Right-handed 310
Helix 7
7
A
257 263Right-handed alpha
Helix 8
8
A
267 282Right-handed alpha
Helix 9
9
A
288 298Right-handed alpha
Helix 10
10
A
307 323Right-handed alpha
Helix 11
11
A
324 338Right-handed alpha
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There are 3 sheets in PDB entry 2VQX. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 8first strand
Strand 2
A
133 135anti-parallel
Strand 3
A
140 142anti-parallel
Strand 4
A
120 124parallel
Strand 5
A
61 65parallel
Strand 6
A
75 79anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 212first strand
Strand 2
A
227 228anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 238first strand
Strand 2
A
242 243anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il