Analysis of interatomic Contacts of Structural Units in PDB entry:
2VR0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2VR0 entry

There are 6 chains in PDB entry 2VR0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 26	VAL 520
B	ALA 25	ALA 522
C	LEU 15	ASP 158
D	GLY 26	LEU 519
E	ALA 25	LEU 519
F	LYS 14	GLU 159

There are136 helices in PDB entry 2VR0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	49	54	Right-handed alpha
Helix 2	2	A	57	65	Right-handed alpha
Helix 3	3	A	66	69	Right-handed 310
Helix 4	4	A	101	106	Right-handed alpha
Helix 5	5	A	109	113	Right-handed 310
Helix 6	6	A	120	122	Right-handed 310
Helix 7	7	A	123	129	Right-handed alpha
Helix 8	8	A	145	151	Right-handed 310
Helix 9	9	A	154	163	Right-handed alpha
Helix 10	10	A	164	166	Right-handed 310
Helix 11	11	A	171	174	Right-handed 310
Helix 12	12	A	186	191	Right-handed alpha
Helix 13	13	A	202	212	Right-handed alpha
Helix 14	14	A	220	231	Right-handed alpha
Helix 15	15	A	258	269	Right-handed alpha
Helix 16	16	A	299	305	Right-handed alpha
Helix 17	17	A	309	313	Right-handed 310
Helix 18	18	A	315	321	Right-handed alpha
Helix 19	19	A	339	343	Right-handed 310
Helix 20	20	A	357	396	Right-handed alpha
Helix 21	21	A	403	427	Right-handed alpha
Helix 22	22	A	435	461	Right-handed alpha
Helix 23	23	A	465	470	Right-handed 310
Helix 24	24	A	472	477	Right-handed alpha
Helix 25	25	A	486	490	Right-handed 310
Helix 26	26	A	492	496	Right-handed 310
Helix 27	27	A	497	503	Right-handed 310
Helix 28	28	B	49	54	Right-handed alpha
Helix 29	29	B	57	66	Right-handed alpha
Helix 30	30	B	67	69	Right-handed 310
Helix 31	31	B	101	106	Right-handed alpha
Helix 32	32	B	109	113	Right-handed 310
Helix 33	33	B	120	122	Right-handed 310
Helix 34	34	B	123	131	Right-handed alpha
Helix 35	35	B	145	151	Right-handed 310
Helix 36	36	B	154	163	Right-handed alpha
Helix 37	37	B	164	166	Right-handed 310
Helix 38	38	B	171	175	Right-handed 310
Helix 39	39	B	186	190	Right-handed 310
Helix 40	40	B	202	212	Right-handed alpha
Helix 41	41	B	215	219	Right-handed 310
Helix 42	42	B	220	231	Right-handed alpha
Helix 43	43	B	258	269	Right-handed alpha
Helix 44	44	B	299	305	Right-handed alpha
Helix 45	45	B	309	313	Right-handed 310
Helix 46	46	B	315	321	Right-handed alpha
Helix 47	47	B	339	343	Right-handed 310
Helix 48	48	B	348	352	Right-handed 310
Helix 49	49	B	357	395	Right-handed alpha
Helix 50	50	B	403	427	Right-handed alpha
Helix 51	51	B	435	461	Right-handed alpha
Helix 52	52	B	465	469	Right-handed 310
Helix 53	53	B	472	477	Right-handed alpha
Helix 54	54	B	486	490	Right-handed 310
Helix 55	55	B	492	496	Right-handed 310
Helix 56	56	B	497	503	Right-handed 310
Helix 57	57	C	15	37	Right-handed alpha
Helix 58	58	C	39	44	Right-handed alpha
Helix 59	59	C	45	48	Right-handed 310
Helix 60	60	C	49	59	Right-handed alpha
Helix 61	61	C	66	71	Right-handed alpha
Helix 62	62	C	74	94	Right-handed alpha
Helix 63	63	C	105	120	Right-handed alpha
Helix 64	64	C	120	125	Right-handed alpha
Helix 65	65	C	128	133	Right-handed alpha
Helix 66	66	C	135	139	Right-handed 310
Helix 67	67	C	140	144	Right-handed 310
Helix 68	68	C	150	154	Right-handed 310
Helix 69	69	D	49	53	Right-handed 310
Helix 70	70	D	57	65	Right-handed alpha
Helix 71	71	D	66	69	Right-handed 310
Helix 72	72	D	101	106	Right-handed alpha
Helix 73	73	D	109	113	Right-handed 310
Helix 74	74	D	120	122	Right-handed 310
Helix 75	75	D	123	129	Right-handed alpha
Helix 76	76	D	145	149	Right-handed 310
Helix 77	77	D	154	163	Right-handed alpha
Helix 78	78	D	164	166	Right-handed 310
Helix 79	79	D	171	174	Right-handed 310
Helix 80	80	D	186	190	Right-handed 310
Helix 81	81	D	202	212	Right-handed alpha
Helix 82	82	D	220	231	Right-handed alpha
Helix 83	83	D	258	269	Right-handed alpha
Helix 84	84	D	299	305	Right-handed alpha
Helix 85	85	D	309	313	Right-handed 310
Helix 86	86	D	315	321	Right-handed alpha
Helix 87	87	D	339	343	Right-handed 310
Helix 88	88	D	357	396	Right-handed alpha
Helix 89	89	D	403	427	Right-handed alpha
Helix 90	90	D	435	461	Right-handed alpha
Helix 91	91	D	465	470	Right-handed 310
Helix 92	92	D	472	477	Right-handed alpha
Helix 93	93	D	486	490	Right-handed 310
Helix 94	94	D	492	496	Right-handed 310
Helix 95	95	D	497	503	Right-handed 310
Helix 96	96	E	49	53	Right-handed 310
Helix 97	97	E	53	56	Right-handed 310
Helix 98	98	E	57	66	Right-handed alpha
Helix 99	99	E	67	69	Right-handed 310
Helix 100	100	E	101	106	Right-handed alpha
Helix 101	101	E	109	113	Right-handed 310
Helix 102	102	E	120	122	Right-handed 310
Helix 103	103	E	123	129	Right-handed alpha
Helix 104	104	E	145	151	Right-handed 310
Helix 105	105	E	154	163	Right-handed alpha
Helix 106	106	E	164	166	Right-handed 310
Helix 107	107	E	171	175	Right-handed 310
Helix 108	108	E	186	190	Right-handed 310
Helix 109	109	E	202	212	Right-handed alpha
Helix 110	110	E	215	219	Right-handed 310
Helix 111	111	E	220	231	Right-handed alpha
Helix 112	112	E	258	269	Right-handed alpha
Helix 113	113	E	299	305	Right-handed alpha
Helix 114	114	E	309	313	Right-handed 310
Helix 115	115	E	315	321	Right-handed alpha
Helix 116	116	E	339	343	Right-handed 310
Helix 117	117	E	348	352	Right-handed 310
Helix 118	118	E	357	395	Right-handed alpha
Helix 119	119	E	403	427	Right-handed alpha
Helix 120	120	E	435	461	Right-handed alpha
Helix 121	121	E	465	469	Right-handed 310
Helix 122	122	E	472	477	Right-handed alpha
Helix 123	123	E	486	490	Right-handed 310
Helix 124	124	E	492	496	Right-handed 310
Helix 125	125	E	497	503	Right-handed 310
Helix 126	126	F	14	37	Right-handed alpha
Helix 127	127	F	39	44	Right-handed alpha
Helix 128	128	F	45	48	Right-handed 310
Helix 129	129	F	49	59	Right-handed alpha
Helix 130	130	F	66	71	Right-handed alpha
Helix 131	131	F	74	94	Right-handed alpha
Helix 132	132	F	105	120	Right-handed alpha
Helix 133	133	F	128	133	Right-handed alpha
Helix 134	134	F	135	139	Right-handed 310
Helix 135	135	F	140	144	Right-handed 310
Helix 136	136	F	150	154	Right-handed 310

There are 16 sheets in PDB entry 2VR0. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, A, DB, C, DD, EA, EB, EC, ED,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	238	first strand
Strand 2	A	249	250	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	285	first strand
Strand 2	A	292	293	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	327	first strand
Strand 2	A	330	333	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	513	514	first strand
Strand 2	A	517	518	anti-parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	238	first strand
Strand 2	B	249	250	anti-parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	285	first strand
Strand 2	B	292	293	anti-parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	323	324	first strand
Strand 2	B	332	333	anti-parallel

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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	513	514	first strand
Strand 2	B	517	518	anti-parallel

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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	238	first strand
Strand 2	D	249	250	anti-parallel

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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	284	285	first strand
Strand 2	D	292	293	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	323	327	first strand
Strand 2	D	330	333	anti-parallel

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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	513	514	first strand
Strand 2	D	517	518	anti-parallel

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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	237	238	first strand
Strand 2	E	249	250	anti-parallel

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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	284	285	first strand
Strand 2	E	292	293	anti-parallel

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There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	323	324	first strand
Strand 2	E	332	333	anti-parallel

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There are 2 strands in ED sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	513	514	first strand
Strand 2	E	517	518	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2VR0

Analysis of interatomic Contacts of Structural Units in PDB entry:
2VR0