Analysis of interatomic Contacts of Structural Units in PDB entry:
2VR5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VR5 entry

There are 2 chains in PDB entry 2VR5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 4LEU 718
B
 PHE 5LEU 718
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 2VR5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 28Right-handed 310
Helix 2
2
A
120 124Right-handed 310
Helix 3
3
A
160 165Right-handed 310
Helix 4
4
A
198 203Right-handed alpha
Helix 5
5
A
204 215Right-handed alpha
Helix 6
6
A
230 235Right-handed alpha
Helix 7
7
A
253 257Right-handed 310
Helix 8
8
A
263 278Right-handed alpha
Helix 9
9
A
303 309Right-handed alpha
Helix 10
10
A
337 354Right-handed alpha
Helix 11
11
A
364 369Right-handed 310
Helix 12
12
A
379 388Right-handed alpha
Helix 13
13
A
390 394Right-handed 310
Helix 14
14
A
421 434Right-handed alpha
Helix 15
15
A
439 447Right-handed alpha
Helix 16
16
A
449 454Right-handed alpha
Helix 17
17
A
455 457Right-handed 310
Helix 18
18
A
459 461Right-handed 310
Helix 19
19
A
474 479Right-handed alpha
Helix 20
20
A
486 490Right-handed 310
Helix 21
21
A
513 532Right-handed alpha
Helix 22
22
A
571 591Right-handed alpha
Helix 23
23
A
592 595Right-handed 310
Helix 24
24
A
642 644Right-handed 310
Helix 25
25
B
26 28Right-handed 310
Helix 26
26
B
120 124Right-handed 310
Helix 27
27
B
132 136Right-handed 310
Helix 28
28
B
142 146Right-handed 310
Helix 29
29
B
170 174Right-handed 310
Helix 30
30
B
180 187Right-handed alpha
Helix 31
31
B
198 203Right-handed alpha
Helix 32
32
B
204 215Right-handed alpha
Helix 33
33
B
230 235Right-handed alpha
Helix 34
34
B
253 257Right-handed 310
Helix 35
35
B
263 279Right-handed alpha
Helix 36
36
B
303 308Right-handed alpha
Helix 37
37
B
308 313Right-handed alpha
Helix 38
38
B
337 354Right-handed alpha
Helix 39
39
B
364 369Right-handed 310
Helix 40
40
B
379 388Right-handed alpha
Helix 41
41
B
421 434Right-handed alpha
Helix 42
42
B
439 447Right-handed alpha
Helix 43
43
B
449 454Right-handed alpha
Helix 44
44
B
459 461Right-handed 310
Helix 45
45
B
474 479Right-handed alpha
Helix 46
46
B
486 490Right-handed 310
Helix 47
47
B
513 532Right-handed alpha
Helix 48
48
B
571 589Right-handed alpha
Helix 49
49
B
625 630Right-handed alpha
Helix 50
50
B
641 644Right-handed 310
Helix 51
51
B
691 694Right-handed 310
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There are 13 sheets in PDB entry 2VR5. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE, BF, BG,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 25first strand
Strand 2
A
30 36anti-parallel
Strand 3
A
69 75anti-parallel
Strand 4
A
64 65anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 62first strand
Strand 2
A
42 47anti-parallel
Strand 3
A
82 88anti-parallel
Strand 4
A
149 150anti-parallel
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There are 9 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 179first strand
Strand 2
A
218 221parallel
Strand 3
A
282 287parallel
Strand 4
A
359 362parallel
Strand 5
A
395 398parallel
Strand 6
A
417 420parallel
Strand 7
A
463 465parallel
Strand 8
A
537 541parallel
Strand 9
A
176 179parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 438first strand
Strand 2
A
631 632anti-parallel
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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
613 616first strand
Strand 2
A
634 640anti-parallel
Strand 3
A
658 664anti-parallel
Strand 4
A
709 717anti-parallel
Strand 5
A
678 684anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
670 673first strand
Strand 2
A
702 705anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 25first strand
Strand 2
B
30 36anti-parallel
Strand 3
B
69 75anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 61first strand
Strand 2
B
42 48anti-parallel
Strand 3
B
82 88anti-parallel
Strand 4
B
148 150anti-parallel
Strand 5
B
113 114anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 92first strand
Strand 2
B
97 98anti-parallel
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There are 9 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 179first strand
Strand 2
B
218 221parallel
Strand 3
B
282 287parallel
Strand 4
B
359 362parallel
Strand 5
B
395 398parallel
Strand 6
B
417 420parallel
Strand 7
B
463 465parallel
Strand 8
B
537 541parallel
Strand 9
B
176 179parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
437 438first strand
Strand 2
B
631 632anti-parallel
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There are 6 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
613 616first strand
Strand 2
B
634 639anti-parallel
Strand 3
B
659 664anti-parallel
Strand 4
B
709 717anti-parallel
Strand 5
B
678 684anti-parallel
Strand 6
B
696 698anti-parallel
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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
670 673first strand
Strand 2
B
702 705anti-parallel
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