Analysis of interatomic Contacts of Structural Units in PDB entry:
2VRB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VRB entry

There is 1 chain in PDB entry 2VRB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LEU 285
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2VRB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 22Right-handed alpha
Helix 2
2
A
25 27Right-handed 310
Helix 3
3
A
35 38Right-handed 310
Helix 4
4
A
39 45Right-handed alpha
Helix 5
5
A
56 64Right-handed alpha
Helix 6
6
A
79 97Right-handed alpha
Helix 7
7
A
109 113Right-handed 310
Helix 8
8
A
116 132Right-handed alpha
Helix 9
9
A
144 147Right-handed 310
Helix 10
10
A
151 159Right-handed alpha
Helix 11
11
A
174 187Right-handed alpha
Helix 12
12
A
206 218Right-handed alpha
Helix 13
13
A
227 238Right-handed alpha
Helix 14
14
A
241 257Right-handed alpha
Helix 15
15
A
265 272Right-handed alpha
Helix 16
16
A
276 285Right-handed alpha
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There are 3 sheets in PDB entry 2VRB. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 51first strand
Strand 2
A
29 33parallel
Strand 3
A
3 5parallel
Strand 4
A
69 72parallel
Strand 5
A
101 107parallel
Strand 6
A
135 140parallel
Strand 7
A
194 198parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 163first strand
Strand 2
A
222 225parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 170first strand
Strand 2
A
204 205anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il