Analysis of interatomic Contacts of Structural Units in PDB entry:
2VRC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VRC entry

There are 4 chains in PDB entry 2VRC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 1LEU 285
B
 PHE 1LEU 285
C
 PHE 1LEU 285
D
 PHE 1LEU 285
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 63 helices in PDB entry 2VRC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 24Right-handed alpha
Helix 2
2
A
25 27Right-handed 310
Helix 3
3
A
36 38Right-handed 310
Helix 4
4
A
39 46Right-handed alpha
Helix 5
5
A
56 64Right-handed alpha
Helix 6
6
A
79 97Right-handed alpha
Helix 7
7
A
109 113Right-handed 310
Helix 8
8
A
116 130Right-handed alpha
Helix 9
9
A
144 147Right-handed 310
Helix 10
10
A
151 159Right-handed alpha
Helix 11
11
A
174 187Right-handed alpha
Helix 12
12
A
206 218Right-handed alpha
Helix 13
13
A
227 238Right-handed alpha
Helix 14
14
A
241 256Right-handed alpha
Helix 15
15
A
265 272Right-handed alpha
Helix 16
16
A
276 285Right-handed alpha
Helix 17
17
B
10 24Right-handed alpha
Helix 18
18
B
25 27Right-handed 310
Helix 19
19
B
35 38Right-handed 310
Helix 20
20
B
39 45Right-handed alpha
Helix 21
21
B
56 64Right-handed alpha
Helix 22
22
B
79 97Right-handed alpha
Helix 23
23
B
109 113Right-handed 310
Helix 24
24
B
115 131Right-handed alpha
Helix 25
25
B
144 147Right-handed 310
Helix 26
26
B
149 151Right-handed 310
Helix 27
27
B
152 159Right-handed alpha
Helix 28
28
B
174 188Right-handed alpha
Helix 29
29
B
206 218Right-handed alpha
Helix 30
30
B
227 237Right-handed alpha
Helix 31
31
B
241 257Right-handed alpha
Helix 32
32
B
265 272Right-handed alpha
Helix 33
33
B
276 284Right-handed alpha
Helix 34
34
C
10 22Right-handed alpha
Helix 35
35
C
25 27Right-handed 310
Helix 36
36
C
39 45Right-handed alpha
Helix 37
37
C
56 65Right-handed alpha
Helix 38
38
C
79 98Right-handed alpha
Helix 39
39
C
109 113Right-handed 310
Helix 40
40
C
116 131Right-handed alpha
Helix 41
41
C
150 157Right-handed alpha
Helix 42
42
C
174 186Right-handed alpha
Helix 43
43
C
206 217Right-handed alpha
Helix 44
44
C
229 237Right-handed alpha
Helix 45
45
C
241 257Right-handed alpha
Helix 46
46
C
265 272Right-handed alpha
Helix 47
47
C
276 284Right-handed alpha
Helix 48
48
D
10 24Right-handed alpha
Helix 49
49
D
25 27Right-handed 310
Helix 50
50
D
35 38Right-handed 310
Helix 51
51
D
39 45Right-handed alpha
Helix 52
52
D
56 58Right-handed 310
Helix 53
53
D
59 65Right-handed alpha
Helix 54
54
D
79 97Right-handed alpha
Helix 55
55
D
109 113Right-handed 310
Helix 56
56
D
115 130Right-handed alpha
Helix 57
57
D
151 159Right-handed alpha
Helix 58
58
D
174 187Right-handed alpha
Helix 59
59
D
205 218Right-handed alpha
Helix 60
60
D
227 238Right-handed alpha
Helix 61
61
D
241 256Right-handed alpha
Helix 62
62
D
265 272Right-handed alpha
Helix 63
63
D
276 283Right-handed alpha
Back to top of page

There are 11 sheets in PDB entry 2VRC. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC, A, DB,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 51first strand
Strand 2
A
29 33parallel
Strand 3
A
3 5parallel
Strand 4
A
69 72parallel
Strand 5
A
101 107parallel
Strand 6
A
135 140parallel
Strand 7
A
194 198parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 163first strand
Strand 2
A
222 225parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 170first strand
Strand 2
A
204 205anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 51first strand
Strand 2
B
29 33parallel
Strand 3
B
3 5parallel
Strand 4
B
69 72parallel
Strand 5
B
101 107parallel
Strand 6
B
135 140parallel
Strand 7
B
194 198parallel
Back to list of sheets
Back to top of page

There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 163first strand
Strand 2
B
222 225parallel
Back to list of sheets
Back to top of page

There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 170first strand
Strand 2
B
204 205anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
48 51first strand
Strand 2
C
29 33parallel
Strand 3
C
3 5parallel
Strand 4
C
69 72parallel
Strand 5
C
101 107parallel
Strand 6
C
135 140parallel
Strand 7
C
194 198parallel
Back to list of sheets
Back to top of page

There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
160 163first strand
Strand 2
C
222 225parallel
Back to list of sheets
Back to top of page

There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
169 170first strand
Strand 2
C
204 205anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
48 51first strand
Strand 2
D
29 33parallel
Strand 3
D
3 6parallel
Strand 4
D
69 72parallel
Strand 5
D
101 107parallel
Strand 6
D
135 140parallel
Strand 7
D
194 198parallel
Back to list of sheets
Back to top of page

There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
160 163first strand
Strand 2
D
222 225parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il