Analysis of interatomic Contacts of Structural Units in PDB entry:
2VRI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VRI entry

There is 1 chain in PDB entry 2VRI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS -9LEU 163
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 2VRI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 20Right-handed alpha
Helix 2
2
A
40 50Right-handed alpha
Helix 3
3
A
52 66Right-handed alpha
Helix 4
4
A
94 109Right-handed alpha
Helix 5
5
A
120 124Right-handed 310
Helix 6
6
A
126 136Right-handed alpha
Helix 7
7
A
149 162Right-handed alpha
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There is 1 sheet ( AA) in PDB entry 2VRI.

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
9 13anti-parallel
Strand 3
A
143 147parallel
Strand 4
A
113 116parallel
Strand 5
A
27 32parallel
Strand 6
A
82 87parallel
Strand 7
A
73 77anti-parallel
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