Analysis of interatomic Contacts of Structural Units in PDB entry:
2VRK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VRK entry

There are 3 chains in PDB entry 2VRK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 4GLY 496
B
 ALA 4GLY 496
C
 ALA 4GLY 496
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 2VRK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 23Right-handed 310
Helix 2
2
A
54 64Right-handed alpha
Helix 3
3
A
73 78Right-handed 310
Helix 4
4
A
80 85Right-handed 310
Helix 5
5
A
87 91Right-handed 310
Helix 6
6
A
109 121Right-handed alpha
Helix 7
7
A
134 147Right-handed alpha
Helix 8
8
A
151 160Right-handed alpha
Helix 9
9
A
185 199Right-handed alpha
Helix 10
10
A
219 231Right-handed alpha
Helix 11
11
A
232 234Right-handed 310
Helix 12
12
A
247 251Right-handed 310
Helix 13
13
A
258 287Right-handed alpha
Helix 14
14
A
310 314Right-handed 310
Helix 15
15
A
319 336Right-handed alpha
Helix 16
16
A
366 376Right-handed alpha
Helix 17
17
A
377 379Right-handed 310
Helix 18
18
A
394 398Right-handed 310
Helix 19
19
B
19 23Right-handed 310
Helix 20
20
B
54 64Right-handed alpha
Helix 21
21
B
73 78Right-handed 310
Helix 22
22
B
80 85Right-handed 310
Helix 23
23
B
87 91Right-handed 310
Helix 24
24
B
109 121Right-handed alpha
Helix 25
25
B
134 147Right-handed alpha
Helix 26
26
B
151 160Right-handed alpha
Helix 27
27
B
185 199Right-handed alpha
Helix 28
28
B
219 231Right-handed alpha
Helix 29
29
B
232 234Right-handed 310
Helix 30
30
B
258 287Right-handed alpha
Helix 31
31
B
310 314Right-handed 310
Helix 32
32
B
319 336Right-handed alpha
Helix 33
33
B
366 376Right-handed alpha
Helix 34
34
B
377 379Right-handed 310
Helix 35
35
B
394 398Right-handed 310
Helix 36
36
C
19 23Right-handed 310
Helix 37
37
C
54 64Right-handed alpha
Helix 38
38
C
73 78Right-handed 310
Helix 39
39
C
80 85Right-handed 310
Helix 40
40
C
87 91Right-handed 310
Helix 41
41
C
109 121Right-handed alpha
Helix 42
42
C
134 147Right-handed alpha
Helix 43
43
C
151 160Right-handed alpha
Helix 44
44
C
185 199Right-handed alpha
Helix 45
45
C
219 231Right-handed alpha
Helix 46
46
C
232 234Right-handed 310
Helix 47
47
C
247 251Right-handed 310
Helix 48
48
C
258 287Right-handed alpha
Helix 49
49
C
310 314Right-handed 310
Helix 50
50
C
319 336Right-handed alpha
Helix 51
51
C
366 376Right-handed alpha
Helix 52
52
C
377 379Right-handed 310
Helix 53
53
C
394 398Right-handed 310
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There are 18 sheets in PDB entry 2VRK. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE, BF, CA, CB, CC, CD, CE, CF,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
467 468first strand
Strand 2
A
440 447anti-parallel
Strand 3
A
487 495anti-parallel
Strand 4
A
414 420anti-parallel
Strand 5
A
402 408anti-parallel
Strand 6
A
382 389anti-parallel
Strand 7
A
5 17anti-parallel
Strand 8
A
427 434parallel
Strand 9
A
478 483anti-parallel
Strand 10
A
472 475anti-parallel
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There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 26first strand
Strand 2
A
340 346parallel
Strand 3
A
293 301parallel
Strand 4
A
236 243parallel
Strand 5
A
209 216parallel
Strand 6
A
170 173parallel
Strand 7
A
123 128parallel
Strand 8
A
67 70parallel
Strand 9
A
24 26parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
52 53anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
103 104anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 359first strand
Strand 2
A
362 365anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 393first strand
Strand 2
A
399 400anti-parallel
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There are 10 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
467 468first strand
Strand 2
B
440 447anti-parallel
Strand 3
B
487 495anti-parallel
Strand 4
B
414 420anti-parallel
Strand 5
B
402 408anti-parallel
Strand 6
B
382 389anti-parallel
Strand 7
B
5 17anti-parallel
Strand 8
B
427 434parallel
Strand 9
B
478 483anti-parallel
Strand 10
B
472 475anti-parallel
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There are 9 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 26first strand
Strand 2
B
340 346parallel
Strand 3
B
293 301parallel
Strand 4
B
236 243parallel
Strand 5
B
209 216parallel
Strand 6
B
170 173parallel
Strand 7
B
123 128parallel
Strand 8
B
67 70parallel
Strand 9
B
24 26parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 49first strand
Strand 2
B
52 53anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 95first strand
Strand 2
B
103 104anti-parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
356 359first strand
Strand 2
B
362 365anti-parallel
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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
392 393first strand
Strand 2
B
399 400anti-parallel
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There are 10 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
467 468first strand
Strand 2
C
440 448anti-parallel
Strand 3
C
487 495anti-parallel
Strand 4
C
414 420anti-parallel
Strand 5
C
402 408anti-parallel
Strand 6
C
382 389anti-parallel
Strand 7
C
5 17anti-parallel
Strand 8
C
427 434parallel
Strand 9
C
478 483anti-parallel
Strand 10
C
472 475anti-parallel
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There are 9 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
24 26first strand
Strand 2
C
340 346parallel
Strand 3
C
293 301parallel
Strand 4
C
236 243parallel
Strand 5
C
209 216parallel
Strand 6
C
170 173parallel
Strand 7
C
123 128parallel
Strand 8
C
67 70parallel
Strand 9
C
24 26parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
48 49first strand
Strand 2
C
52 53anti-parallel
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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
94 95first strand
Strand 2
C
103 104anti-parallel
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There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
356 359first strand
Strand 2
C
362 365anti-parallel
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There are 2 strands in CF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
392 393first strand
Strand 2
C
399 400anti-parallel
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