Analysis of interatomic Contacts of Structural Units in PDB entry:
2VRS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VRS entry

There are 3 chains in PDB entry 2VRS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 122THR 326
B
 ASP 122THR 326
C
 LEU 117THR 326
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 2VRS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
122 154Right-handed alpha
Helix 2
2
A
259 264Right-handed 310
Helix 3
3
A
266 271Right-handed alpha
Helix 4
4
B
122 154Right-handed alpha
Helix 5
5
B
155 160Right-handed 310
Helix 6
6
B
251 253Right-handed 310
Helix 7
7
B
259 264Right-handed 310
Helix 8
8
B
266 271Right-handed alpha
Helix 9
9
C
117 154Right-handed alpha
Helix 10
10
C
259 264Right-handed 310
Helix 11
11
C
266 271Right-handed alpha
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There are 10 sheets in PDB entry 2VRS. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, CA, CB,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 162first strand
Strand 2
B
172 175parallel
Strand 3
B
166 169anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 169first strand
Strand 2
A
172 175anti-parallel
Strand 3
C
161 162parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 184first strand
Strand 2
A
188 190anti-parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 239first strand
Strand 2
A
313 325anti-parallel
Strand 3
A
226 234anti-parallel
Strand 4
A
213 223anti-parallel
Strand 5
A
196 208anti-parallel
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There are 7 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 239first strand
Strand 2
A
313 325anti-parallel
Strand 3
A
274 282anti-parallel
Strand 4
A
285 297anti-parallel
Strand 5
A
300 306anti-parallel
Strand 6
A
243 249anti-parallel
Strand 7
A
196 208anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 162first strand
Strand 2
C
172 175parallel
Strand 3
C
166 169anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 184first strand
Strand 2
B
188 190anti-parallel
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There are 10 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 208first strand
Strand 2
B
213 223anti-parallel
Strand 3
B
226 232anti-parallel
Strand 4
B
313 325anti-parallel
Strand 5
B
274 282anti-parallel
Strand 6
B
285 297anti-parallel
Strand 7
B
300 306anti-parallel
Strand 8
B
243 249anti-parallel
Strand 9
B
196 208anti-parallel
Strand 10
B
196 208first strand
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
183 184first strand
Strand 2
C
188 189anti-parallel
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There are 10 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
196 207first strand
Strand 2
C
213 223anti-parallel
Strand 3
C
226 234anti-parallel
Strand 4
C
313 325anti-parallel
Strand 5
C
274 282anti-parallel
Strand 6
C
285 297anti-parallel
Strand 7
C
300 306anti-parallel
Strand 8
C
243 249anti-parallel
Strand 9
C
196 207anti-parallel
Strand 10
C
196 207first strand
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