Analysis of interatomic Contacts of Structural Units in PDB entry:
2VRW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VRW entry

There are 2 chains in PDB entry 2VRW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 177
B
 THR 190CYS 564
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 2VRW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 26Right-handed alpha
Helix 2
2
A
67 72Right-handed 310
Helix 3
3
A
86 96Right-handed alpha
Helix 4
4
A
96 105Right-handed alpha
Helix 5
5
A
116 121Right-handed alpha
Helix 6
6
A
122 132Right-handed alpha
Helix 7
7
A
138 149Right-handed alpha
Helix 8
8
A
164 177Right-handed alpha
Helix 9
9
B
190 220Right-handed alpha
Helix 10
10
B
220 225Right-handed alpha
Helix 11
11
B
229 238Right-handed alpha
Helix 12
12
B
239 260Right-handed alpha
Helix 13
13
B
261 264Right-handed 310
Helix 14
14
B
265 274Right-handed alpha
Helix 15
15
B
275 277Right-handed 310
Helix 16
16
B
278 317Right-handed alpha
Helix 17
17
B
321 326Right-handed alpha
Helix 18
18
B
327 334Right-handed alpha
Helix 19
19
B
335 347Right-handed alpha
Helix 20
20
B
349 389Right-handed alpha
Helix 21
21
B
396 401Right-handed 310
Helix 22
22
B
488 507Right-handed alpha
Helix 23
23
B
512 516Right-handed 310
Helix 24
24
B
554 561Right-handed 310
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There are 3 sheets in PDB entry 2VRW. Click on sheet of interest to get list of strands forming it: AA, BA, BB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 46first strand
Strand 2
A
49 56anti-parallel
Strand 3
A
3 10parallel
Strand 4
A
77 83parallel
Strand 5
A
110 115parallel
Strand 6
A
153 156parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
390 391first strand
Strand 2
B
440 448parallel
Strand 3
B
430 437anti-parallel
Strand 4
B
420 427anti-parallel
Strand 5
B
403 412anti-parallel
Strand 6
B
481 486anti-parallel
Strand 7
B
469 475anti-parallel
Strand 8
B
452 455anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
518 521first strand
Strand 2
B
543 546anti-parallel
Strand 3
B
552 553anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il