Analysis of interatomic Contacts of Structural Units in PDB entry:
2VSA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VSA entry

There is 1 chain in PDB entry 2VSA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 32GLY 866
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 2VSA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
37 42Right-handed 310
Helix 2
2
A
46 50Right-handed 310
Helix 3
3
A
52 63Right-handed alpha
Helix 4
4
A
65 69Right-handed 310
Helix 5
5
A
102 110Right-handed alpha
Helix 6
6
A
127 135Right-handed alpha
Helix 7
7
A
181 185Right-handed alpha
Helix 8
8
A
205 207Right-handed 310
Helix 9
9
A
234 238Right-handed 310
Helix 10
10
A
273 277Right-handed 310
Helix 11
11
A
277 279Right-handed 310
Helix 12
12
A
333 336Right-handed 310
Helix 13
13
A
382 385Right-handed 310
Helix 14
14
A
413 415Right-handed 310
Helix 15
15
A
430 433Right-handed 310
Helix 16
16
A
478 481Right-handed 310
Helix 17
17
A
523 525Right-handed 310
Helix 18
18
A
554 556Right-handed 310
Helix 19
19
A
571 573Right-handed 310
Helix 20
20
A
620 623Right-handed 310
Helix 21
21
A
665 667Right-handed 310
Helix 22
22
A
712 715Right-handed 310
Helix 23
23
A
761 765Right-handed 310
Helix 24
24
A
805 807Right-handed 310
Helix 25
25
A
837 839Right-handed 310
Helix 26
26
A
854 857Right-handed 310
Back to top of page

There are 17 sheets in PDB entry 2VSA. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 75first strand
Strand 2
A
179 180anti-parallel
Strand 3
A
197 201anti-parallel
Strand 4
A
140 145anti-parallel
Strand 5
A
95 99anti-parallel
Strand 6
A
167 173anti-parallel
Strand 7
A
209 216anti-parallel
Strand 8
A
219 225anti-parallel
Strand 9
A
246 248parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
154 155anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 160first strand
Strand 2
A
281 282anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 353first strand
Strand 2
A
338 343anti-parallel
Strand 3
A
300 306anti-parallel
Strand 4
A
435 439anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 316first strand
Strand 2
A
323 329anti-parallel
Strand 3
A
374 377anti-parallel
Strand 4
A
360 363anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 391first strand
Strand 2
A
397 401anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 411first strand
Strand 2
A
422 425anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
448 450first strand
Strand 2
A
483 488anti-parallel
Strand 3
A
493 498anti-parallel
Strand 4
A
527 532anti-parallel
Strand 5
A
538 542anti-parallel
Strand 6
A
575 577anti-parallel
Strand 7
A
453 454anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
460 463first strand
Strand 2
A
471 474anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
505 508first strand
Strand 2
A
516 519anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
548 552first strand
Strand 2
A
563 567anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
589 595first strand
Strand 2
A
625 630anti-parallel
Strand 3
A
635 640anti-parallel
Strand 4
A
669 674anti-parallel
Strand 5
A
680 684anti-parallel
Strand 6
A
717 721anti-parallel
Strand 7
A
589 595anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AM sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
601 605first strand
Strand 2
A
612 616anti-parallel
Strand 3
A
702 703anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AN sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
646 650first strand
Strand 2
A
658 662anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AO sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
690 693first strand
Strand 2
A
705 708anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AP sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
753 757first strand
Strand 2
A
739 746anti-parallel
Strand 3
A
730 736anti-parallel
Strand 4
A
796 798first strand
Strand 5
A
784 787anti-parallel
Strand 6
A
776 781anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AQ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
793 794first strand
Strand 2
A
846 849anti-parallel
Strand 3
A
832 835anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il