Analysis of interatomic Contacts of Structural Units in PDB entry:
2VSF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VSF entry

There is 1 chain in PDB entry 2VSF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 23ARG 615
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 2VSF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
36 42Right-handed alpha
Helix 2
2
A
60 76Right-handed alpha
Helix 3
3
A
87 92Right-handed alpha
Helix 4
4
A
94 99Right-handed alpha
Helix 5
5
A
105 123Right-handed alpha
Helix 6
6
A
124 128Right-handed 310
Helix 7
7
A
132 136Right-handed 310
Helix 8
8
A
137 147Right-handed alpha
Helix 9
9
A
150 162Right-handed alpha
Helix 10
10
A
164 173Right-handed alpha
Helix 11
11
A
174 176Right-handed 310
Helix 12
12
A
183 187Right-handed alpha
Helix 13
13
A
188 200Right-handed alpha
Helix 14
14
A
212 214Right-handed 310
Helix 15
15
A
215 225Right-handed alpha
Helix 16
16
A
230 243Right-handed alpha
Helix 17
17
A
253 273Right-handed alpha
Helix 18
18
A
281 294Right-handed alpha
Helix 19
19
A
296 322Right-handed alpha
Helix 20
20
A
327 341Right-handed alpha
Helix 21
21
A
366 371Right-handed alpha
Helix 22
22
A
372 376Right-handed 310
Helix 23
23
A
387 396Right-handed alpha
Helix 24
24
A
409 411Right-handed 310
Helix 25
25
A
429 448Right-handed alpha
Helix 26
26
A
457 468Right-handed alpha
Helix 27
27
A
480 494Right-handed alpha
Helix 28
28
A
504 508Right-handed 310
Helix 29
29
A
531 544Right-handed alpha
Helix 30
30
A
547 553Right-handed alpha
Helix 31
31
A
553 569Right-handed alpha
Helix 32
32
A
585 590Right-handed 310
Helix 33
33
A
600 615Right-handed alpha
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There are 3 sheets in PDB entry 2VSF. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 84first strand
Strand 2
A
178 182parallel
Strand 3
A
53 58parallel
Strand 4
A
206 210parallel
Strand 5
A
377 381parallel
Strand 6
A
24 27parallel
Strand 7
A
401 402parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 229first strand
Strand 2
A
358 363anti-parallel
Strand 3
A
347 352anti-parallel
Strand 4
A
278 280anti-parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
498 501first strand
Strand 2
A
451 455parallel
Strand 3
A
519 522parallel
Strand 4
A
576 581parallel
Strand 5
A
413 418parallel
Strand 6
A
596 598parallel
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