Analysis of interatomic Contacts of Structural Units in PDB entry:
2VSG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VSG entry

There are 2 chains in PDB entry 2VSG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1ALA 358
B
 THR 1ALA 358
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 2VSG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 54Right-handed alpha
Helix 2
2
A
59 112Right-handed alpha
Helix 3
3
A
135 137Right-handed 310
Helix 4
4
A
172 174Right-handed 310
Helix 5
5
A
208 210Right-handed 310
Helix 6
6
A
233 235Right-handed 310
Helix 7
7
A
239 251Right-handed alpha
Helix 8
8
A
263 272Right-handed alpha
Helix 9
9
A
274 287Right-handed alpha
Helix 10
10
A
292 294Right-handed 310
Helix 11
11
A
298 305Right-handed alpha
Helix 12
12
A
312 320Right-handed alpha
Helix 13
13
A
339 341Right-handed 310
Helix 14
14
A
345 356Right-handed alpha
Helix 15
15
B
7 54Right-handed alpha
Helix 16
16
B
59 112Right-handed alpha
Helix 17
17
B
135 137Right-handed 310
Helix 18
18
B
233 237Right-handed 310
Helix 19
19
B
239 251Right-handed alpha
Helix 20
20
B
263 271Right-handed alpha
Helix 21
21
B
274 288Right-handed alpha
Helix 22
22
B
292 294Right-handed 310
Helix 23
23
B
298 305Right-handed alpha
Helix 24
24
B
308 322Right-handed 310
Helix 25
25
B
339 341Right-handed 310
Helix 26
26
B
345 356Right-handed alpha
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There are 4 sheets in PDB entry 2VSG. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 207first strand
Strand 2
A
212 214anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 326first strand
Strand 2
A
336 338anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
205 207first strand
Strand 2
B
212 214anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
324 326first strand
Strand 2
B
336 338anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il