Analysis of interatomic Contacts of Structural Units in PDB entry:
2VSK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2VSK entry

There are 4 chains in PDB entry 2VSK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 188	GLU 603
B	ILE 31	GLY 168
C	ILE 188	SER 602
D	ILE 31	GLY 168

There are 11 helices in PDB entry 2VSK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	302	306	Right-handed 310
Helix 2	2	A	306	310	Right-handed 310
Helix 3	3	A	373	375	Right-handed 310
Helix 4	4	A	378	382	Right-handed 310
Helix 5	5	A	393	398	Right-handed alpha
Helix 6	6	B	85	92	Right-handed alpha
Helix 7	7	C	302	306	Right-handed 310
Helix 8	8	C	373	375	Right-handed 310
Helix 9	9	C	378	382	Right-handed 310
Helix 10	10	C	393	398	Right-handed alpha
Helix 11	11	D	85	92	Right-handed alpha

There are 22 sheets in PDB entry 2VSK. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, BA, BB, CA, CB, CC, CD, CE, CF, CG, CH, CI, A, DB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	202	first strand
Strand 2	A	593	594	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	225	first strand
Strand 2	A	228	237	anti-parallel
Strand 3	A	244	257	anti-parallel
Strand 4	A	263	271	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	287	first strand
Strand 2	A	290	297	anti-parallel
Strand 3	A	314	320	anti-parallel
Strand 4	A	332	335	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	341	first strand
Strand 2	A	426	430	parallel
Strand 3	A	407	417	anti-parallel
Strand 4	A	361	371	anti-parallel
Strand 5	A	347	350	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	341	first strand
Strand 2	A	426	430	parallel
Strand 3	A	407	417	anti-parallel
Strand 4	A	361	371	anti-parallel
Strand 5	A	356	358	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	442	447	first strand
Strand 2	A	450	455	anti-parallel
Strand 3	A	465	471	anti-parallel
Strand 4	A	476	479	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	515	first strand
Strand 2	A	520	526	anti-parallel
Strand 3	A	535	541	anti-parallel
Strand 4	A	544	550	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	557	558	first strand
Strand 2	A	580	581	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	563	568	first strand
Strand 2	A	571	576	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	37	first strand
Strand 2	B	60	65	parallel
Strand 3	B	111	116	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	53	first strand
Strand 2	B	162	166	parallel
Strand 3	B	134	138	anti-parallel
Strand 4	B	79	84	anti-parallel
Strand 5	B	102	104	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	201	202	first strand
Strand 2	C	593	594	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	215	225	first strand
Strand 2	C	228	237	anti-parallel
Strand 3	C	244	255	anti-parallel
Strand 4	C	265	271	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	279	287	first strand
Strand 2	C	290	297	anti-parallel
Strand 3	C	314	320	anti-parallel
Strand 4	C	332	335	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	341	first strand
Strand 2	C	426	430	parallel
Strand 3	C	407	417	anti-parallel
Strand 4	C	361	371	anti-parallel
Strand 5	C	347	350	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	341	first strand
Strand 2	C	426	430	parallel
Strand 3	C	407	417	anti-parallel
Strand 4	C	361	371	anti-parallel
Strand 5	C	356	357	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in CF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	442	447	first strand
Strand 2	C	450	455	anti-parallel
Strand 3	C	465	471	anti-parallel
Strand 4	C	476	477	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in CG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	512	515	first strand
Strand 2	C	520	526	anti-parallel
Strand 3	C	535	541	anti-parallel
Strand 4	C	544	550	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in CH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	557	558	first strand
Strand 2	C	579	581	anti-parallel
Strand 3	C	589	590	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in CI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	563	568	first strand
Strand 2	C	571	576	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	37	first strand
Strand 2	D	60	65	parallel
Strand 3	D	111	116	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	51	53	first strand
Strand 2	D	162	166	parallel
Strand 3	D	134	138	anti-parallel
Strand 4	D	79	84	anti-parallel
Strand 5	D	102	104	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2VSK

Analysis of interatomic Contacts of Structural Units in PDB entry:
2VSK