Analysis of interatomic Contacts of Structural Units in PDB entry:
2VSS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VSS entry

There are 6 chains in PDB entry 2VSS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 4THR 250
B
 TYR 4GLU 251
C
 GLY 6THR 250
D
 THR 3LEU 248
E
 TYR 4THR 250
F
 THR 3ASP 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 74 helices in PDB entry 2VSS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 30Right-handed 310
Helix 2
2
A
34 51Right-handed alpha
Helix 3
3
A
85 99Right-handed alpha
Helix 4
4
A
121 128Right-handed alpha
Helix 5
5
A
141 147Right-handed 310
Helix 6
6
A
153 162Right-handed alpha
Helix 7
7
A
163 174Right-handed alpha
Helix 8
8
A
179 186Right-handed alpha
Helix 9
9
A
193 195Right-handed 310
Helix 10
10
A
196 210Right-handed alpha
Helix 11
11
A
212 227Right-handed alpha
Helix 12
12
A
230 249Right-handed alpha
Helix 13
13
B
26 30Right-handed 310
Helix 14
14
B
34 51Right-handed alpha
Helix 15
15
B
71 81Right-handed alpha
Helix 16
16
B
84 99Right-handed alpha
Helix 17
17
B
121 128Right-handed alpha
Helix 18
18
B
153 162Right-handed alpha
Helix 19
19
B
163 174Right-handed alpha
Helix 20
20
B
179 185Right-handed alpha
Helix 21
21
B
193 195Right-handed 310
Helix 22
22
B
196 210Right-handed alpha
Helix 23
23
B
212 227Right-handed alpha
Helix 24
24
B
230 249Right-handed alpha
Helix 25
25
C
26 30Right-handed 310
Helix 26
26
C
34 50Right-handed alpha
Helix 27
27
C
85 99Right-handed alpha
Helix 28
28
C
121 128Right-handed alpha
Helix 29
29
C
142 147Right-handed 310
Helix 30
30
C
153 162Right-handed alpha
Helix 31
31
C
163 174Right-handed alpha
Helix 32
32
C
179 185Right-handed alpha
Helix 33
33
C
196 210Right-handed alpha
Helix 34
34
C
212 227Right-handed alpha
Helix 35
35
C
230 249Right-handed alpha
Helix 36
36
D
26 30Right-handed 310
Helix 37
37
D
34 50Right-handed alpha
Helix 38
38
A
4 75Right-handed alpha
Helix 39
39
D
76 81Right-handed alpha
Helix 40
40
D
83 99Right-handed alpha
Helix 41
41
D
121 128Right-handed alpha
Helix 42
42
D
141 147Right-handed 310
Helix 43
43
D
153 162Right-handed alpha
Helix 44
44
D
163 174Right-handed alpha
Helix 45
45
D
179 185Right-handed alpha
Helix 46
46
D
193 210Right-handed alpha
Helix 47
47
D
212 227Right-handed alpha
Helix 48
48
D
230 248Right-handed alpha
Helix 49
49
E
26 30Right-handed 310
Helix 50
50
E
34 50Right-handed alpha
Helix 51
51
E
71 76Right-handed alpha
Helix 52
52
E
85 99Right-handed alpha
Helix 53
53
E
121 128Right-handed alpha
Helix 54
54
E
142 147Right-handed 310
Helix 55
55
E
153 162Right-handed alpha
Helix 56
56
E
163 174Right-handed alpha
Helix 57
57
E
179 186Right-handed alpha
Helix 58
58
E
193 195Right-handed 310
Helix 59
59
E
196 210Right-handed alpha
Helix 60
60
E
212 227Right-handed alpha
Helix 61
61
E
230 249Right-handed alpha
Helix 62
62
F
26 30Right-handed 310
Helix 63
63
F
34 51Right-handed alpha
Helix 64
64
A
4 75Right-handed alpha
Helix 65
65
F
76 81Right-handed alpha
Helix 66
66
F
83 99Right-handed alpha
Helix 67
67
F
121 128Right-handed alpha
Helix 68
68
F
142 146Right-handed 310
Helix 69
69
F
153 162Right-handed alpha
Helix 70
70
F
163 174Right-handed alpha
Helix 71
71
F
179 185Right-handed alpha
Helix 72
72
F
193 210Right-handed alpha
Helix 73
73
F
212 227Right-handed alpha
Helix 74
74
F
230 248Right-handed alpha
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There are 12 sheets in PDB entry 2VSS. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB, EA, EB, FA, FB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 16first strand
Strand 2
A
19 24anti-parallel
Strand 3
A
56 61parallel
Strand 4
A
109 113parallel
Strand 5
A
130 134parallel
Strand 6
A
190 192parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
116 118parallel
Strand 3
A
138 140parallel
Strand 4
A
177 178anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 16first strand
Strand 2
B
18 24anti-parallel
Strand 3
B
54 61parallel
Strand 4
B
109 113parallel
Strand 5
B
130 134parallel
Strand 6
B
190 192parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 67first strand
Strand 2
B
116 118parallel
Strand 3
B
138 140parallel
Strand 4
B
176 178anti-parallel
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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 16first strand
Strand 2
C
19 24anti-parallel
Strand 3
C
56 61parallel
Strand 4
C
109 113parallel
Strand 5
C
130 134parallel
Strand 6
C
190 192parallel
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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
117 118first strand
Strand 2
C
138 140parallel
Strand 3
C
176 178anti-parallel
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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 16first strand
Strand 2
D
19 24anti-parallel
Strand 3
D
56 61parallel
Strand 4
D
109 113parallel
Strand 5
D
130 134parallel
Strand 6
D
190 192parallel
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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
65 67first strand
Strand 2
D
116 118parallel
Strand 3
D
138 140parallel
Strand 4
D
177 178anti-parallel
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There are 6 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 16first strand
Strand 2
E
19 24anti-parallel
Strand 3
E
56 61parallel
Strand 4
E
109 113parallel
Strand 5
E
130 134parallel
Strand 6
E
190 192parallel
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There are 4 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
65 67first strand
Strand 2
E
116 118parallel
Strand 3
E
138 140parallel
Strand 4
E
176 178anti-parallel
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There are 6 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
11 16first strand
Strand 2
F
19 24anti-parallel
Strand 3
F
56 61parallel
Strand 4
F
109 113parallel
Strand 5
F
130 134parallel
Strand 6
F
190 192parallel
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There are 4 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
65 67first strand
Strand 2
F
116 118parallel
Strand 3
F
138 140parallel
Strand 4
F
176 178anti-parallel
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