Analysis of interatomic Contacts of Structural Units in PDB entry:
2VSW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VSW entry

There are 2 chains in PDB entry 2VSW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 5GLY 138
B
 MET 5GLY 138
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2VSW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 20Right-handed alpha
Helix 2
2
A
33 40Right-handed alpha
Helix 3
3
A
51 60Right-handed alpha
Helix 4
4
A
64 72Right-handed alpha
Helix 5
5
A
94 98Right-handed 310
Helix 6
6
A
102 115Right-handed alpha
Helix 7
7
A
123 132Right-handed alpha
Helix 8
8
B
12 21Right-handed alpha
Helix 9
9
B
33 40Right-handed alpha
Helix 10
10
B
51 60Right-handed alpha
Helix 11
11
B
64 72Right-handed alpha
Helix 12
12
B
102 115Right-handed alpha
Helix 13
13
B
123 130Right-handed alpha
Helix 14
14
B
132 134Right-handed 310
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There are 4 sheets in PDB entry 2VSW. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 10first strand
Strand 2
A
118 121parallel
Strand 3
A
84 88parallel
Strand 4
A
26 30parallel
Strand 5
A
46 47parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 42first strand
Strand 2
A
136 137anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 11first strand
Strand 2
B
117 122parallel
Strand 3
B
84 88parallel
Strand 4
B
26 30parallel
Strand 5
B
46 47parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 42first strand
Strand 2
B
136 137anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il