Analysis of interatomic Contacts of Structural Units in PDB entry:
2VSX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VSX entry

There are 4 chains in PDB entry 2VSX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 12LEU 393
B
 GLN 12LEU 393
E
 ALA 576ASN 853
F
 ASN 577TRP 852
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 2VSX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 28Right-handed 310
Helix 2
2
A
30 39Right-handed alpha
Helix 3
3
A
46 58Right-handed alpha
Helix 4
4
A
71 84Right-handed alpha
Helix 5
5
A
99 114Right-handed alpha
Helix 6
6
A
146 156Right-handed alpha
Helix 7
7
A
171 178Right-handed alpha
Helix 8
8
A
180 191Right-handed alpha
Helix 9
9
A
205 216Right-handed alpha
Helix 10
10
A
243 245Right-handed 310
Helix 11
11
A
246 258Right-handed alpha
Helix 12
12
A
269 283Right-handed alpha
Helix 13
13
A
295 307Right-handed alpha
Helix 14
14
A
319 322Right-handed 310
Helix 15
15
A
340 343Right-handed 310
Helix 16
16
A
344 349Right-handed alpha
Helix 17
17
A
368 379Right-handed alpha
Helix 18
18
B
23 28Right-handed 310
Helix 19
19
B
30 39Right-handed alpha
Helix 20
20
B
46 58Right-handed alpha
Helix 21
21
B
71 84Right-handed alpha
Helix 22
22
B
99 114Right-handed alpha
Helix 23
23
B
146 156Right-handed alpha
Helix 24
24
B
171 178Right-handed alpha
Helix 25
25
B
180 191Right-handed alpha
Helix 26
26
B
205 216Right-handed alpha
Helix 27
27
B
243 245Right-handed 310
Helix 28
28
B
246 258Right-handed alpha
Helix 29
29
B
269 283Right-handed alpha
Helix 30
30
B
295 307Right-handed alpha
Helix 31
31
B
319 322Right-handed 310
Helix 32
32
B
340 343Right-handed 310
Helix 33
33
B
344 349Right-handed alpha
Helix 34
34
B
368 379Right-handed alpha
Helix 35
35
E
602 617Right-handed alpha
Helix 36
36
E
621 634Right-handed alpha
Helix 37
37
E
635 639Right-handed 310
Helix 38
38
E
642 659Right-handed alpha
Helix 39
39
E
662 677Right-handed alpha
Helix 40
40
E
691 709Right-handed alpha
Helix 41
41
E
732 756Right-handed alpha
Helix 42
42
E
760 774Right-handed alpha
Helix 43
43
E
780 799Right-handed alpha
Helix 44
44
E
812 829Right-handed alpha
Helix 45
45
E
833 849Right-handed alpha
Helix 46
46
F
602 617Right-handed alpha
Helix 47
47
F
621 634Right-handed alpha
Helix 48
48
F
635 639Right-handed 310
Helix 49
49
F
642 659Right-handed alpha
Helix 50
50
F
662 677Right-handed alpha
Helix 51
51
F
691 709Right-handed alpha
Helix 52
52
F
732 756Right-handed alpha
Helix 53
53
F
760 774Right-handed alpha
Helix 54
54
F
780 799Right-handed alpha
Helix 55
55
F
812 829Right-handed alpha
Helix 56
56
F
833 849Right-handed alpha
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There are 4 sheets in PDB entry 2VSX. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 124first strand
Strand 2
A
142 145parallel
Strand 3
A
93 96parallel
Strand 4
A
166 170parallel
Strand 5
A
196 201parallel
Strand 6
A
62 65parallel
Strand 7
A
220 223parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 290first strand
Strand 2
A
313 317parallel
Strand 3
A
263 267parallel
Strand 4
A
331 334parallel
Strand 5
A
358 365parallel
Strand 6
A
234 242parallel
Strand 7
A
384 385parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 124first strand
Strand 2
B
142 145parallel
Strand 3
B
93 96parallel
Strand 4
B
166 170parallel
Strand 5
B
196 201parallel
Strand 6
B
62 65parallel
Strand 7
B
220 223parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
287 290first strand
Strand 2
B
313 317parallel
Strand 3
B
263 267parallel
Strand 4
B
331 334parallel
Strand 5
B
358 365parallel
Strand 6
B
234 242parallel
Strand 7
B
384 385parallel
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