Analysis of interatomic Contacts of Structural Units in PDB entry:
2VSZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VSZ entry

There are 2 chains in PDB entry 2VSZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 527GLY 674
B
 LEU 529LYS 675
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2VSZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
531 533Right-handed 310
Helix 2
2
A
534 539Right-handed alpha
Helix 3
3
A
539 559Right-handed alpha
Helix 4
4
A
620 626Right-handed 310
Helix 5
5
A
634 639Right-handed alpha
Helix 6
6
A
658 673Right-handed alpha
Helix 7
7
B
531 533Right-handed 310
Helix 8
8
B
534 539Right-handed alpha
Helix 9
9
B
539 559Right-handed alpha
Helix 10
10
B
600 604Right-handed 310
Helix 11
11
B
620 626Right-handed 310
Helix 12
12
B
634 639Right-handed 310
Helix 13
13
B
658 673Right-handed alpha
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There are 4 sheets in PDB entry 2VSZ. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
560 563first strand
Strand 2
A
574 579anti-parallel
Strand 3
A
585 591anti-parallel
Strand 4
A
606 609anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
613 618first strand
Strand 2
A
641 646anti-parallel
Strand 3
A
650 655anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
560 563first strand
Strand 2
B
574 579anti-parallel
Strand 3
B
585 591anti-parallel
Strand 4
B
606 609anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
613 618first strand
Strand 2
B
641 646anti-parallel
Strand 3
B
650 655anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il