Analysis of interatomic Contacts of Structural Units in PDB entry:
2VT2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VT2 entry

There are 2 chains in PDB entry 2VT2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 11SER 209
B
 LYS 7GLU 213
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 2VT2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 29Right-handed alpha
Helix 2
2
A
35 44Right-handed alpha
Helix 3
3
A
46 57Right-handed alpha
Helix 4
4
A
69 83Right-handed alpha
Helix 5
5
A
94 101Right-handed alpha
Helix 6
6
A
138 143Right-handed alpha
Helix 7
7
A
154 168Right-handed alpha
Helix 8
8
A
193 209Right-handed alpha
Helix 9
9
B
9 29Right-handed alpha
Helix 10
10
B
35 44Right-handed alpha
Helix 11
11
B
46 58Right-handed alpha
Helix 12
12
B
69 85Right-handed alpha
Helix 13
13
B
94 102Right-handed alpha
Helix 14
14
B
138 143Right-handed alpha
Helix 15
15
B
154 156Right-handed 310
Helix 16
16
B
157 168Right-handed alpha
Helix 17
17
B
193 208Right-handed alpha
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There are 4 sheets in PDB entry 2VT2. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 34first strand
Strand 2
A
67 68anti-parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 128first strand
Strand 2
A
131 135anti-parallel
Strand 3
A
113 118parallel
Strand 4
A
88 91parallel
Strand 5
A
148 151parallel
Strand 6
A
172 175parallel
Strand 7
A
188 191parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 34first strand
Strand 2
B
67 68anti-parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 128first strand
Strand 2
B
131 135anti-parallel
Strand 3
B
111 118parallel
Strand 4
B
86 91parallel
Strand 5
B
148 151parallel
Strand 6
B
172 175parallel
Strand 7
B
188 191parallel
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