Analysis of interatomic Contacts of Structural Units in PDB entry:
2VTB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2VTB entry

There are 18 chains in PDB entry 2VTB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 0	GLY 499
B	ASP 2	HIS 496
C	HIS 3	GLY 497
D	ASP 2	HIS 496
E	ASP 2	GLY 497
F	HIS 3	HIS 496
G	T 1	T 2
G	T 4	T 5
H	T 1	T 2
H	T 4	T 5
I	T 1	T 2
I	T 4	T 5
J	T 1	T 2
J	T 4	T 5
K	T 2	T 2
K	T 4	T 5
L	T 2	T 2
L	T 4	T 5

There are149 helices in PDB entry 2VTB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	11	27	Right-handed alpha
Helix 2	2	A	55	64	Right-handed alpha
Helix 3	3	A	75	80	Right-handed 310
Helix 4	4	A	91	111	Right-handed alpha
Helix 5	5	A	122	135	Right-handed alpha
Helix 6	6	A	146	163	Right-handed alpha
Helix 7	7	A	179	183	Right-handed 310
Helix 8	8	A	186	190	Right-handed 310
Helix 9	9	A	193	205	Right-handed alpha
Helix 10	10	A	251	264	Right-handed alpha
Helix 11	11	A	268	270	Right-handed 310
Helix 12	12	A	271	276	Right-handed alpha
Helix 13	13	A	288	294	Right-handed alpha
Helix 14	14	A	298	313	Right-handed alpha
Helix 15	15	A	316	340	Right-handed alpha
Helix 16	16	A	341	344	Right-handed 310
Helix 17	17	A	359	368	Right-handed alpha
Helix 18	18	A	373	387	Right-handed alpha
Helix 19	19	A	390	404	Right-handed alpha
Helix 20	20	A	408	420	Right-handed alpha
Helix 21	21	A	424	436	Right-handed alpha
Helix 22	22	A	449	458	Right-handed alpha
Helix 23	23	A	461	468	Right-handed alpha
Helix 24	24	A	469	472	Right-handed 310
Helix 25	25	A	475	481	Right-handed alpha
Helix 26	26	B	11	27	Right-handed alpha
Helix 27	27	B	55	64	Right-handed alpha
Helix 28	28	B	75	80	Right-handed 310
Helix 29	29	B	91	111	Right-handed alpha
Helix 30	30	B	122	135	Right-handed alpha
Helix 31	31	B	146	164	Right-handed alpha
Helix 32	32	B	179	183	Right-handed 310
Helix 33	33	B	186	190	Right-handed 310
Helix 34	34	B	193	205	Right-handed alpha
Helix 35	35	B	251	264	Right-handed alpha
Helix 36	36	B	268	270	Right-handed 310
Helix 37	37	B	271	276	Right-handed alpha
Helix 38	38	B	288	294	Right-handed alpha
Helix 39	39	B	298	313	Right-handed alpha
Helix 40	40	B	316	340	Right-handed alpha
Helix 41	41	B	341	344	Right-handed 310
Helix 42	42	B	359	368	Right-handed alpha
Helix 43	43	B	373	387	Right-handed alpha
Helix 44	44	B	390	404	Right-handed alpha
Helix 45	45	B	408	420	Right-handed alpha
Helix 46	46	B	424	436	Right-handed alpha
Helix 47	47	B	449	458	Right-handed alpha
Helix 48	48	B	461	468	Right-handed alpha
Helix 49	49	B	469	472	Right-handed 310
Helix 50	50	B	475	481	Right-handed alpha
Helix 51	51	C	11	26	Right-handed alpha
Helix 52	52	C	55	64	Right-handed alpha
Helix 53	53	C	75	80	Right-handed 310
Helix 54	54	C	91	111	Right-handed alpha
Helix 55	55	C	122	135	Right-handed alpha
Helix 56	56	C	146	163	Right-handed alpha
Helix 57	57	C	179	183	Right-handed 310
Helix 58	58	C	186	190	Right-handed 310
Helix 59	59	C	193	205	Right-handed alpha
Helix 60	60	C	251	264	Right-handed alpha
Helix 61	61	C	268	270	Right-handed 310
Helix 62	62	C	271	276	Right-handed alpha
Helix 63	63	C	288	294	Right-handed alpha
Helix 64	64	C	298	313	Right-handed alpha
Helix 65	65	C	316	340	Right-handed alpha
Helix 66	66	C	341	345	Right-handed 310
Helix 67	67	C	359	368	Right-handed alpha
Helix 68	68	C	373	387	Right-handed alpha
Helix 69	69	C	390	404	Right-handed alpha
Helix 70	70	C	408	420	Right-handed alpha
Helix 71	71	C	424	436	Right-handed alpha
Helix 72	72	C	449	458	Right-handed alpha
Helix 73	73	C	461	468	Right-handed alpha
Helix 74	74	C	469	472	Right-handed 310
Helix 75	75	C	475	481	Right-handed alpha
Helix 76	76	D	11	27	Right-handed alpha
Helix 77	77	D	55	64	Right-handed alpha
Helix 78	78	D	75	80	Right-handed 310
Helix 79	79	D	91	111	Right-handed alpha
Helix 80	80	D	122	135	Right-handed alpha
Helix 81	81	D	146	163	Right-handed alpha
Helix 82	82	D	179	183	Right-handed 310
Helix 83	83	D	186	190	Right-handed 310
Helix 84	84	D	193	205	Right-handed alpha
Helix 85	85	D	251	264	Right-handed alpha
Helix 86	86	D	268	270	Right-handed 310
Helix 87	87	D	271	276	Right-handed alpha
Helix 88	88	D	288	294	Right-handed alpha
Helix 89	89	D	298	313	Right-handed alpha
Helix 90	90	D	316	340	Right-handed alpha
Helix 91	91	D	341	345	Right-handed 310
Helix 92	92	D	359	368	Right-handed alpha
Helix 93	93	D	373	387	Right-handed alpha
Helix 94	94	D	390	404	Right-handed alpha
Helix 95	95	D	408	420	Right-handed alpha
Helix 96	96	D	424	436	Right-handed alpha
Helix 97	97	D	449	458	Right-handed alpha
Helix 98	98	D	461	468	Right-handed alpha
Helix 99	99	D	469	474	Right-handed 310
Helix 100	100	E	11	26	Right-handed alpha
Helix 101	101	E	55	64	Right-handed alpha
Helix 102	102	E	75	80	Right-handed 310
Helix 103	103	E	91	112	Right-handed alpha
Helix 104	104	E	122	135	Right-handed alpha
Helix 105	105	E	146	163	Right-handed alpha
Helix 106	106	E	179	183	Right-handed 310
Helix 107	107	E	186	190	Right-handed 310
Helix 108	108	E	193	205	Right-handed alpha
Helix 109	109	E	232	236	Right-handed 310
Helix 110	110	E	251	264	Right-handed alpha
Helix 111	111	E	268	270	Right-handed 310
Helix 112	112	E	271	276	Right-handed alpha
Helix 113	113	E	288	294	Right-handed alpha
Helix 114	114	E	298	313	Right-handed alpha
Helix 115	115	E	316	340	Right-handed alpha
Helix 116	116	E	341	345	Right-handed 310
Helix 117	117	E	347	351	Right-handed 310
Helix 118	118	E	359	368	Right-handed alpha
Helix 119	119	E	373	387	Right-handed alpha
Helix 120	120	E	390	404	Right-handed alpha
Helix 121	121	E	408	420	Right-handed alpha
Helix 122	122	E	424	436	Right-handed alpha
Helix 123	123	E	449	458	Right-handed alpha
Helix 124	124	E	461	468	Right-handed alpha
Helix 125	125	E	469	472	Right-handed 310
Helix 126	126	F	11	27	Right-handed alpha
Helix 127	127	F	55	64	Right-handed alpha
Helix 128	128	F	75	80	Right-handed 310
Helix 129	129	F	91	111	Right-handed alpha
Helix 130	130	F	122	135	Right-handed alpha
Helix 131	131	F	146	163	Right-handed alpha
Helix 132	132	F	179	183	Right-handed 310
Helix 133	133	F	186	190	Right-handed 310
Helix 134	134	F	193	205	Right-handed alpha
Helix 135	135	F	251	264	Right-handed alpha
Helix 136	136	F	268	270	Right-handed 310
Helix 137	137	F	271	276	Right-handed alpha
Helix 138	138	F	288	294	Right-handed alpha
Helix 139	139	F	298	313	Right-handed alpha
Helix 140	140	F	316	340	Right-handed alpha
Helix 141	141	F	341	344	Right-handed 310
Helix 142	142	F	359	368	Right-handed alpha
Helix 143	143	F	373	387	Right-handed alpha
Helix 144	144	F	390	404	Right-handed alpha
Helix 145	145	F	408	420	Right-handed alpha
Helix 146	146	F	424	436	Right-handed alpha
Helix 147	147	F	449	458	Right-handed alpha
Helix 148	148	F	461	468	Right-handed alpha
Helix 149	149	F	469	472	Right-handed 310

There are 13 sheets in PDB entry 2VTB. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, CC, A, DB, EA, EB, FA, FB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	7	first strand
Strand 2	A	246	248	parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	120	first strand
Strand 2	A	67	74	parallel
Strand 3	A	41	46	parallel
Strand 4	A	138	142	parallel
Strand 5	A	168	172	parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	245	248	parallel

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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	120	first strand
Strand 2	B	67	74	parallel
Strand 3	B	41	46	parallel
Strand 4	B	136	142	parallel
Strand 5	B	168	172	parallel

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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	245	248	parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	28	first strand
Strand 2	C	213	214	parallel

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There are 5 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	120	first strand
Strand 2	C	67	74	parallel
Strand 3	C	41	46	parallel
Strand 4	C	138	142	parallel
Strand 5	C	168	172	parallel

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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	245	248	parallel

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There are 5 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	117	120	first strand
Strand 2	D	67	74	parallel
Strand 3	D	41	46	parallel
Strand 4	D	138	142	parallel
Strand 5	D	168	172	parallel

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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	7	first strand
Strand 2	E	246	248	parallel

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There are 5 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	117	120	first strand
Strand 2	E	67	74	parallel
Strand 3	E	41	46	parallel
Strand 4	E	138	142	parallel
Strand 5	E	168	172	parallel

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There are 2 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	245	248	parallel

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There are 5 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	117	120	first strand
Strand 2	F	67	74	parallel
Strand 3	F	41	46	parallel
Strand 4	F	138	142	parallel
Strand 5	F	168	172	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2VTB

Analysis of interatomic Contacts of Structural Units in PDB entry:
2VTB