Analysis of interatomic Contacts of Structural Units in PDB entry:
2VTF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VTF entry

There are 2 chains in PDB entry 2VTF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2LYS 617
B
 THR 2PHE 619
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 2VTF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 18Right-handed alpha
Helix 2
2
A
20 24Right-handed 310
Helix 3
3
A
26 31Right-handed 310
Helix 4
4
A
83 87Right-handed 310
Helix 5
5
A
106 116Right-handed alpha
Helix 6
6
A
128 132Right-handed 310
Helix 7
7
A
134 142Right-handed alpha
Helix 8
8
A
150 164Right-handed alpha
Helix 9
9
A
178 196Right-handed alpha
Helix 10
10
A
224 227Right-handed 310
Helix 11
11
A
248 258Right-handed alpha
Helix 12
12
A
261 263Right-handed 310
Helix 13
13
A
274 278Right-handed 310
Helix 14
14
A
281 285Right-handed 310
Helix 15
15
A
302 307Right-handed alpha
Helix 16
16
A
310 323Right-handed alpha
Helix 17
17
A
340 344Right-handed 310
Helix 18
18
A
383 386Right-handed 310
Helix 19
19
A
492 495Right-handed 310
Helix 20
20
A
585 593Right-handed alpha
Helix 21
21
B
12 19Right-handed alpha
Helix 22
22
B
20 24Right-handed 310
Helix 23
23
B
26 31Right-handed 310
Helix 24
24
B
83 87Right-handed 310
Helix 25
25
B
106 116Right-handed alpha
Helix 26
26
B
128 132Right-handed 310
Helix 27
27
B
134 142Right-handed alpha
Helix 28
28
B
150 164Right-handed alpha
Helix 29
29
B
178 196Right-handed alpha
Helix 30
30
B
224 227Right-handed 310
Helix 31
31
B
248 258Right-handed alpha
Helix 32
32
B
261 263Right-handed 310
Helix 33
33
B
274 278Right-handed 310
Helix 34
34
B
281 285Right-handed 310
Helix 35
35
B
302 307Right-handed alpha
Helix 36
36
B
310 323Right-handed alpha
Helix 37
37
B
340 344Right-handed 310
Helix 38
38
B
383 386Right-handed 310
Helix 39
39
B
492 495Right-handed 310
Helix 40
40
B
583 589Right-handed alpha
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There are 18 sheets in PDB entry 2VTF. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, BA, BB, BC, BD, BE, BF, BG, BH, BI,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 42first strand
Strand 2
A
348 349anti-parallel
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There are 10 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 59first strand
Strand 2
A
295 299parallel
Strand 3
A
265 270parallel
Strand 4
A
238 241parallel
Strand 5
A
201 205parallel
Strand 6
A
167 172parallel
Strand 7
A
120 126anti-parallel
Strand 8
A
89 92parallel
Strand 9
A
55 59parallel
Strand 10
A
55 59first strand
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 230first strand
Strand 2
A
233 234anti-parallel
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There are 9 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 358first strand
Strand 2
A
513 524anti-parallel
Strand 3
A
400 406first strand
Strand 4
A
416 422anti-parallel
Strand 5
A
513 524anti-parallel
Strand 6
A
477 481first strand
Strand 7
A
484 490anti-parallel
Strand 8
A
445 452anti-parallel
Strand 9
A
513 524anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 365first strand
Strand 2
A
380 381anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 370first strand
Strand 2
A
373 376anti-parallel
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There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 397first strand
Strand 2
A
428 439anti-parallel
Strand 3
A
498 507anti-parallel
Strand 4
A
459 464anti-parallel
Strand 5
A
471 473anti-parallel
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There are 3 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
535 539first strand
Strand 2
A
547 551anti-parallel
Strand 3
A
580 583anti-parallel
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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
571 576first strand
Strand 2
A
557 564anti-parallel
Strand 3
A
595 603anti-parallel
Strand 4
A
612 616anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 42first strand
Strand 2
B
348 349anti-parallel
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There are 10 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 59first strand
Strand 2
B
295 299parallel
Strand 3
B
265 270parallel
Strand 4
B
238 241parallel
Strand 5
B
201 205parallel
Strand 6
B
167 172parallel
Strand 7
B
120 126anti-parallel
Strand 8
B
89 92parallel
Strand 9
B
55 59parallel
Strand 10
B
55 59first strand
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 230first strand
Strand 2
B
233 234anti-parallel
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There are 9 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
356 358first strand
Strand 2
B
513 524anti-parallel
Strand 3
B
400 406first strand
Strand 4
B
416 422anti-parallel
Strand 5
B
513 524anti-parallel
Strand 6
B
477 481first strand
Strand 7
B
484 490anti-parallel
Strand 8
B
445 452anti-parallel
Strand 9
B
513 524anti-parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
364 365first strand
Strand 2
B
380 381anti-parallel
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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
368 370first strand
Strand 2
B
373 376anti-parallel
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There are 5 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
395 397first strand
Strand 2
B
428 439anti-parallel
Strand 3
B
498 507anti-parallel
Strand 4
B
459 464anti-parallel
Strand 5
B
471 473anti-parallel
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There are 3 strands in BH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
536 538first strand
Strand 2
B
547 550anti-parallel
Strand 3
B
578 581anti-parallel
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There are 4 strands in BI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
569 574first strand
Strand 2
B
557 564anti-parallel
Strand 3
B
593 601anti-parallel
Strand 4
B
610 614anti-parallel
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