Analysis of interatomic Contacts of Structural Units in PDB entry:
2VTU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VTU entry

There are 2 chains in PDB entry 2VTU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
J
 ALA 1TYR 257
L
 ALA 1TYR 257
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 2VTU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
J
98 111Right-handed alpha
Helix 2
2
J
117 123Right-handed alpha
Helix 3
3
J
226 239Right-handed alpha
Helix 4
4
J
245 251Right-handed alpha
Helix 5
5
L
98 112Right-handed alpha
Helix 6
6
L
117 122Right-handed alpha
Helix 7
7
L
226 240Right-handed alpha
Helix 8
8
L
245 250Right-handed alpha
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There are 12 sheets in PDB entry 2VTU. Click on sheet of interest to get list of strands forming it: JA, JB, JC, JD, JE, LA, LB, LC, LD, LE, LF, LG,

There are 3 strands in JA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
7 8first strand
Strand 2
J
19 21anti-parallel
Strand 3
J
33 34anti-parallel
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There are 2 strands in JB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
67 69first strand
Strand 2
J
78 80anti-parallel
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There are 2 strands in JC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
88 89first strand
Strand 2
J
215 216anti-parallel
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There are 2 strands in JD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
159 160first strand
Strand 2
J
172 173anti-parallel
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There are 3 strands in JE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
176 177first strand
Strand 2
J
183 186anti-parallel
Strand 3
J
220 221anti-parallel
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There are 4 strands in LA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
21 24first strand
Strand 2
L
30 33anti-parallel
Strand 3
L
43 49anti-parallel
Strand 4
L
62 63anti-parallel
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There are 3 strands in LB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
21 24first strand
Strand 2
L
30 33anti-parallel
Strand 3
L
43 49anti-parallel
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There are 2 strands in LC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
70 71first strand
Strand 2
L
76 77anti-parallel
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There are 2 strands in LD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
86 88first strand
Strand 2
L
214 216anti-parallel
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There are 4 strands in LE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
149 152first strand
Strand 2
L
158 161anti-parallel
Strand 3
L
171 177anti-parallel
Strand 4
L
190 191anti-parallel
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There are 3 strands in LF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
149 152first strand
Strand 2
L
158 161anti-parallel
Strand 3
L
171 177anti-parallel
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There are 2 strands in LG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
198 199first strand
Strand 2
L
204 205anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il