Analysis of interatomic Contacts of Structural Units in PDB entry:
2VUG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VUG entry

There are 2 chains in PDB entry 2VUG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 10ASP 382
B
 LYS 10ASP 382
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 2VUG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 17Right-handed alpha
Helix 2
2
A
21 27Right-handed alpha
Helix 3
3
A
77 85Right-handed alpha
Helix 4
4
A
120 127Right-handed alpha
Helix 5
5
A
128 130Right-handed 310
Helix 6
6
A
133 139Right-handed alpha
Helix 7
7
A
184 196Right-handed alpha
Helix 8
8
A
210 224Right-handed alpha
Helix 9
9
A
244 257Right-handed alpha
Helix 10
10
A
258 262Right-handed 310
Helix 11
11
A
263 281Right-handed alpha
Helix 12
12
A
284 312Right-handed alpha
Helix 13
13
A
326 339Right-handed alpha
Helix 14
14
A
364 376Right-handed alpha
Helix 15
15
B
10 17Right-handed alpha
Helix 16
16
B
21 27Right-handed alpha
Helix 17
17
B
77 85Right-handed alpha
Helix 18
18
B
120 127Right-handed alpha
Helix 19
19
B
128 130Right-handed 310
Helix 20
20
B
133 139Right-handed alpha
Helix 21
21
B
184 196Right-handed alpha
Helix 22
22
B
207 209Right-handed 310
Helix 23
23
B
210 224Right-handed alpha
Helix 24
24
B
244 257Right-handed alpha
Helix 25
25
B
258 262Right-handed 310
Helix 26
26
B
263 281Right-handed alpha
Helix 27
27
B
284 312Right-handed alpha
Helix 28
28
B
326 339Right-handed alpha
Helix 29
29
B
364 376Right-handed alpha
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There are 8 sheets in PDB entry 2VUG. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 34first strand
Strand 2
A
42 44anti-parallel
Strand 3
A
57 60anti-parallel
Strand 4
A
63 65anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 207first strand
Strand 2
A
89 95anti-parallel
Strand 3
A
228 232anti-parallel
Strand 4
A
239 243anti-parallel
Strand 5
A
72 74parallel
Strand 6
B
379 380anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 114first strand
Strand 2
A
99 106anti-parallel
Strand 3
A
142 149anti-parallel
Strand 4
A
168 176anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 324first strand
Strand 2
A
355 363anti-parallel
Strand 3
A
343 352anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 34first strand
Strand 2
B
42 44anti-parallel
Strand 3
B
57 60anti-parallel
Strand 4
B
63 65anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 73first strand
Strand 2
B
239 243parallel
Strand 3
B
228 232anti-parallel
Strand 4
B
90 95anti-parallel
Strand 5
B
202 206anti-parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 114first strand
Strand 2
B
99 106anti-parallel
Strand 3
B
142 149anti-parallel
Strand 4
B
168 176anti-parallel
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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
317 324first strand
Strand 2
B
355 363anti-parallel
Strand 3
B
343 352anti-parallel
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