Analysis of interatomic Contacts of Structural Units in PDB entry:
2VUP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VUP entry

There is 1 chain in PDB entry 2VUP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3THR 166
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 2VUP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 10Right-handed 310
Helix 2
2
A
22 26Right-handed 310
Helix 3
3
A
41 56Right-handed alpha
Helix 4
5
A
79 89Right-handed alpha
Helix 5
6
A
110 118Right-handed alpha
Helix 6
8
A
154 164Right-handed alpha
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There is 1 sheet ( AA) in PDB entry 2VUP.

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 21first strand
Strand 2
A
11 15anti-parallel
Strand 3
A
94 98parallel
Strand 4
A
61 68parallel
Strand 5
A
29 36parallel
Strand 6
A
131 136anti-parallel
Strand 7
A
143 147anti-parallel
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