Analysis of interatomic Contacts of Structural Units in PDB entry:
2VUU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2VUU entry

There are 16 chains in PDB entry 2VUU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 3	LEU 352
B	GLN 3	LEU 352
C	GLN 3	LEU 352
D	GLN 3	LEU 352
E	GLN 3	LEU 352
F	GLN 3	LEU 352
G	GLN 3	LEU 352
H	GLN 3	LEU 352
I	THR 671	LEU 712
J	THR 671	LEU 712
K	THR 671	LEU 712
L	THR 671	LEU 712
M	THR 670	LEU 711
N	THR 671	LEU 712
O	THR 671	SER 711
P	THR 671	LEU 712

There are123 helices in PDB entry 2VUU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	15	28	Right-handed alpha
Helix 2	2	A	41	50	Right-handed alpha
Helix 3	3	A	63	72	Right-handed alpha
Helix 4	4	A	82	86	Right-handed 310
Helix 5	5	A	87	103	Right-handed alpha
Helix 6	6	A	115	119	Right-handed 310
Helix 7	7	A	128	142	Right-handed alpha
Helix 8	8	A	155	157	Right-handed 310
Helix 9	9	A	191	212	Right-handed alpha
Helix 10	10	A	224	237	Right-handed alpha
Helix 11	11	A	255	270	Right-handed alpha
Helix 12	12	A	279	283	Right-handed 310
Helix 13	13	A	318	325	Right-handed alpha
Helix 14	14	A	330	338	Right-handed alpha
Helix 15	15	A	338	346	Right-handed alpha
Helix 16	16	B	15	29	Right-handed alpha
Helix 17	17	B	41	50	Right-handed alpha
Helix 18	18	B	63	71	Right-handed alpha
Helix 19	19	B	87	103	Right-handed alpha
Helix 20	20	B	115	119	Right-handed 310
Helix 21	21	B	128	142	Right-handed alpha
Helix 22	22	B	155	157	Right-handed 310
Helix 23	23	B	191	212	Right-handed alpha
Helix 24	24	B	224	237	Right-handed alpha
Helix 25	25	B	255	270	Right-handed alpha
Helix 26	26	B	317	325	Right-handed alpha
Helix 27	27	B	330	338	Right-handed alpha
Helix 28	28	B	338	346	Right-handed alpha
Helix 29	29	C	15	29	Right-handed alpha
Helix 30	30	C	41	50	Right-handed alpha
Helix 31	31	C	63	72	Right-handed alpha
Helix 32	32	C	82	86	Right-handed 310
Helix 33	33	C	87	103	Right-handed alpha
Helix 34	34	C	115	119	Right-handed 310
Helix 35	35	C	128	142	Right-handed alpha
Helix 36	36	C	155	157	Right-handed 310
Helix 37	37	C	191	212	Right-handed alpha
Helix 38	38	C	224	237	Right-handed alpha
Helix 39	39	C	255	270	Right-handed alpha
Helix 40	40	C	279	283	Right-handed 310
Helix 41	41	C	317	325	Right-handed alpha
Helix 42	42	C	330	338	Right-handed alpha
Helix 43	43	C	338	347	Right-handed alpha
Helix 44	44	D	15	29	Right-handed alpha
Helix 45	45	D	41	50	Right-handed alpha
Helix 46	46	D	63	72	Right-handed alpha
Helix 47	47	D	82	86	Right-handed 310
Helix 48	48	D	87	103	Right-handed alpha
Helix 49	49	D	115	119	Right-handed 310
Helix 50	50	D	128	142	Right-handed alpha
Helix 51	51	D	155	157	Right-handed 310
Helix 52	52	D	191	212	Right-handed alpha
Helix 53	53	D	224	237	Right-handed alpha
Helix 54	54	D	255	271	Right-handed alpha
Helix 55	55	D	317	325	Right-handed alpha
Helix 56	56	D	330	338	Right-handed alpha
Helix 57	57	D	338	346	Right-handed alpha
Helix 58	58	E	15	28	Right-handed alpha
Helix 59	59	E	41	50	Right-handed alpha
Helix 60	60	E	63	72	Right-handed alpha
Helix 61	61	E	82	86	Right-handed 310
Helix 62	62	E	87	103	Right-handed alpha
Helix 63	63	E	115	119	Right-handed 310
Helix 64	64	E	128	141	Right-handed alpha
Helix 65	65	E	155	157	Right-handed 310
Helix 66	66	E	191	212	Right-handed alpha
Helix 67	67	E	224	237	Right-handed alpha
Helix 68	68	E	255	270	Right-handed alpha
Helix 69	69	E	279	283	Right-handed 310
Helix 70	70	E	317	325	Right-handed alpha
Helix 71	71	E	330	338	Right-handed alpha
Helix 72	72	E	338	347	Right-handed alpha
Helix 73	73	F	15	29	Right-handed alpha
Helix 74	74	F	41	50	Right-handed alpha
Helix 75	75	F	63	71	Right-handed alpha
Helix 76	76	F	82	86	Right-handed 310
Helix 77	77	F	87	103	Right-handed alpha
Helix 78	78	F	115	119	Right-handed 310
Helix 79	79	F	128	142	Right-handed alpha
Helix 80	80	F	155	157	Right-handed 310
Helix 81	81	F	191	212	Right-handed alpha
Helix 82	82	F	224	237	Right-handed alpha
Helix 83	83	F	255	270	Right-handed alpha
Helix 84	84	F	318	325	Right-handed alpha
Helix 85	85	F	330	338	Right-handed alpha
Helix 86	86	F	338	346	Right-handed alpha
Helix 87	87	G	15	29	Right-handed alpha
Helix 88	88	G	41	50	Right-handed alpha
Helix 89	89	G	63	71	Right-handed alpha
Helix 90	90	G	82	86	Right-handed 310
Helix 91	91	G	87	103	Right-handed alpha
Helix 92	92	G	115	119	Right-handed 310
Helix 93	93	G	128	142	Right-handed alpha
Helix 94	94	G	155	157	Right-handed 310
Helix 95	95	G	191	212	Right-handed alpha
Helix 96	96	G	224	237	Right-handed alpha
Helix 97	97	G	255	270	Right-handed alpha
Helix 98	98	G	317	325	Right-handed alpha
Helix 99	99	G	330	338	Right-handed alpha
Helix 100	100	G	338	346	Right-handed alpha
Helix 101	101	H	15	29	Right-handed alpha
Helix 102	102	H	41	50	Right-handed alpha
Helix 103	103	H	63	72	Right-handed alpha
Helix 104	104	H	82	86	Right-handed 310
Helix 105	105	H	87	103	Right-handed alpha
Helix 106	106	H	115	119	Right-handed 310
Helix 107	107	H	128	141	Right-handed alpha
Helix 108	108	H	155	157	Right-handed 310
Helix 109	109	H	191	212	Right-handed alpha
Helix 110	110	H	224	237	Right-handed alpha
Helix 111	111	H	255	270	Right-handed alpha
Helix 112	112	H	279	283	Right-handed 310
Helix 113	113	H	318	325	Right-handed alpha
Helix 114	114	H	330	338	Right-handed alpha
Helix 115	115	H	338	347	Right-handed alpha
Helix 116	116	I	694	705	Right-handed alpha
Helix 117	117	J	694	705	Right-handed alpha
Helix 118	118	K	694	705	Right-handed alpha
Helix 119	119	L	694	705	Right-handed alpha
Helix 120	120	M	693	704	Right-handed alpha
Helix 121	121	N	695	705	Right-handed alpha
Helix 122	122	O	694	705	Right-handed alpha
Helix 123	123	P	694	705	Right-handed alpha

There are 30 sheets in PDB entry 2VUU. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC, A, DB, C, EA, EB, EC, FA, FB, FC, GA, GB, GC, HA, HB, HC, IA, JA, MA, NA, OA, PA,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	57	first strand
Strand 2	A	31	36	parallel
Strand 3	A	7	10	parallel
Strand 4	A	76	79	parallel
Strand 5	A	107	112	parallel
Strand 6	A	145	150	parallel
Strand 7	A	215	218	parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	153	first strand
Strand 2	A	187	190	parallel
Strand 3	A	221	223	anti-parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	169	first strand
Strand 2	A	175	179	anti-parallel
Strand 3	A	240	244	parallel

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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	57	first strand
Strand 2	B	31	36	parallel
Strand 3	B	7	11	parallel
Strand 4	B	76	79	parallel
Strand 5	B	107	111	parallel
Strand 6	B	145	150	parallel
Strand 7	B	215	218	parallel

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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	153	first strand
Strand 2	B	187	190	parallel
Strand 3	B	221	223	anti-parallel

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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	169	first strand
Strand 2	B	175	179	anti-parallel
Strand 3	B	240	244	parallel

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There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	57	first strand
Strand 2	C	31	36	parallel
Strand 3	C	7	10	parallel
Strand 4	C	76	79	parallel
Strand 5	C	107	112	parallel
Strand 6	C	145	150	parallel
Strand 7	C	214	218	parallel

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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	153	first strand
Strand 2	C	187	190	parallel
Strand 3	C	221	223	anti-parallel

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There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	169	first strand
Strand 2	C	175	179	anti-parallel
Strand 3	C	240	244	parallel

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There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	57	first strand
Strand 2	D	31	36	parallel
Strand 3	D	7	10	parallel
Strand 4	D	76	79	parallel
Strand 5	D	107	112	parallel
Strand 6	D	145	150	parallel
Strand 7	D	215	218	parallel

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There are 3 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	153	first strand
Strand 2	D	187	190	parallel
Strand 3	D	221	223	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	169	first strand
Strand 2	D	175	179	anti-parallel
Strand 3	D	240	244	parallel

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There are 7 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	57	first strand
Strand 2	E	31	36	parallel
Strand 3	E	7	10	parallel
Strand 4	E	76	79	parallel
Strand 5	E	107	112	parallel
Strand 6	E	145	150	parallel
Strand 7	E	214	218	parallel

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There are 3 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	152	153	first strand
Strand 2	E	187	190	parallel
Strand 3	E	221	223	anti-parallel

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There are 3 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	168	169	first strand
Strand 2	E	175	179	anti-parallel
Strand 3	E	240	244	parallel

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There are 7 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	57	first strand
Strand 2	F	31	36	parallel
Strand 3	F	7	10	parallel
Strand 4	F	76	79	parallel
Strand 5	F	107	111	parallel
Strand 6	F	145	150	parallel
Strand 7	F	214	218	parallel

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There are 3 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	152	153	first strand
Strand 2	F	187	190	parallel
Strand 3	F	221	223	anti-parallel

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There are 3 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	167	169	first strand
Strand 2	F	175	179	anti-parallel
Strand 3	F	240	244	parallel

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There are 7 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	53	57	first strand
Strand 2	G	31	36	parallel
Strand 3	G	7	10	parallel
Strand 4	G	76	79	parallel
Strand 5	G	107	112	parallel
Strand 6	G	145	150	parallel
Strand 7	G	214	218	parallel

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There are 3 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	152	153	first strand
Strand 2	G	187	190	parallel
Strand 3	G	221	223	anti-parallel

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There are 3 strands in GC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	168	169	first strand
Strand 2	G	175	179	anti-parallel
Strand 3	G	240	244	parallel

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There are 7 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	53	57	first strand
Strand 2	H	31	36	parallel
Strand 3	H	7	10	parallel
Strand 4	H	76	79	parallel
Strand 5	H	107	112	parallel
Strand 6	H	145	150	parallel
Strand 7	H	214	218	parallel

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There are 3 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	152	153	first strand
Strand 2	H	187	190	parallel
Strand 3	H	221	223	anti-parallel

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There are 3 strands in HC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	167	169	first strand
Strand 2	H	175	179	anti-parallel
Strand 3	H	240	244	parallel

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There are 2 strands in IA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	685	686	first strand
Strand 2	I	692	693	anti-parallel

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There are 2 strands in JA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	685	686	first strand
Strand 2	J	692	693	anti-parallel

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There are 2 strands in MA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	684	685	first strand
Strand 2	M	691	692	anti-parallel

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There are 2 strands in NA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	684	686	first strand
Strand 2	N	692	694	anti-parallel

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There are 2 strands in OA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	685	686	first strand
Strand 2	O	692	693	anti-parallel

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There are 2 strands in PA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	685	686	first strand
Strand 2	P	692	693	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2VUU

Analysis of interatomic Contacts of Structural Units in PDB entry:
2VUU