Analysis of interatomic Contacts of Structural Units in PDB entry:
2VV5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2VV5 entry

There are 7 chains in PDB entry 2VV5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 25	LYS 281
B	LEU 25	LYS 281
C	LEU 25	LYS 281
D	LEU 25	LYS 281
E	LEU 25	LYS 281
F	LEU 25	LYS 281
G	LEU 25	LYS 281

There are 56 helices in PDB entry 2VV5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	25	28	Right-handed 310
Helix 2	2	A	29	60	Right-handed alpha
Helix 3	3	A	62	88	Right-handed alpha
Helix 4	4	A	95	112	Right-handed alpha
Helix 5	5	A	112	126	Right-handed alpha
Helix 6	6	A	167	172	Right-handed alpha
Helix 7	7	A	197	212	Right-handed alpha
Helix 8	8	A	245	265	Right-handed alpha
Helix 9	9	B	25	28	Right-handed 310
Helix 10	10	B	29	60	Right-handed alpha
Helix 11	11	B	62	88	Right-handed alpha
Helix 12	12	B	95	112	Right-handed alpha
Helix 13	13	B	112	126	Right-handed alpha
Helix 14	14	B	167	172	Right-handed alpha
Helix 15	15	B	197	212	Right-handed alpha
Helix 16	16	B	245	265	Right-handed alpha
Helix 17	17	C	25	28	Right-handed 310
Helix 18	18	C	29	60	Right-handed alpha
Helix 19	19	C	62	88	Right-handed alpha
Helix 20	20	C	95	112	Right-handed alpha
Helix 21	21	C	112	126	Right-handed alpha
Helix 22	22	C	167	172	Right-handed alpha
Helix 23	23	C	197	212	Right-handed alpha
Helix 24	24	C	245	265	Right-handed alpha
Helix 25	25	D	25	28	Right-handed 310
Helix 26	26	D	29	60	Right-handed alpha
Helix 27	27	D	62	88	Right-handed alpha
Helix 28	28	D	95	112	Right-handed alpha
Helix 29	29	D	112	126	Right-handed alpha
Helix 30	30	D	167	172	Right-handed alpha
Helix 31	31	D	197	212	Right-handed alpha
Helix 32	32	D	245	265	Right-handed alpha
Helix 33	33	E	25	28	Right-handed 310
Helix 34	34	E	29	60	Right-handed alpha
Helix 35	35	E	62	88	Right-handed alpha
Helix 36	36	E	95	112	Right-handed alpha
Helix 37	37	E	112	126	Right-handed alpha
Helix 38	38	E	167	172	Right-handed alpha
Helix 39	39	E	197	212	Right-handed alpha
Helix 40	40	E	245	264	Right-handed alpha
Helix 41	41	F	25	28	Right-handed 310
Helix 42	42	F	29	60	Right-handed alpha
Helix 43	43	F	62	88	Right-handed alpha
Helix 44	44	F	95	112	Right-handed alpha
Helix 45	45	F	112	126	Right-handed alpha
Helix 46	46	F	167	172	Right-handed alpha
Helix 47	47	F	197	212	Right-handed alpha
Helix 48	48	F	245	265	Right-handed alpha
Helix 49	49	G	25	28	Right-handed 310
Helix 50	50	G	29	60	Right-handed alpha
Helix 51	51	G	62	88	Right-handed alpha
Helix 52	52	G	95	112	Right-handed alpha
Helix 53	53	G	112	126	Right-handed alpha
Helix 54	54	G	167	172	Right-handed alpha
Helix 55	55	G	197	212	Right-handed alpha
Helix 56	56	G	245	265	Right-handed alpha

There are 9 sheets in PDB entry 2VV5. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, CA, A, EA, FA, GA,

There are 90 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	137	first strand
Strand 2	A	142	148	parallel
Strand 3	A	152	156	parallel
Strand 4	A	162	166	parallel
Strand 5	G	175	177	parallel
Strand 6	G	135	137	parallel
Strand 7	G	142	148	parallel
Strand 8	G	152	156	parallel
Strand 9	G	162	166	parallel
Strand 10	F	175	177	parallel
Strand 11	F	135	137	parallel
Strand 12	F	142	148	parallel
Strand 13	F	152	156	parallel
Strand 14	F	162	166	parallel
Strand 15	E	175	177	parallel
Strand 16	E	135	137	parallel
Strand 17	E	142	148	parallel
Strand 18	E	152	156	parallel
Strand 19	E	162	166	parallel
Strand 20	D	175	177	parallel
Strand 21	D	135	137	parallel
Strand 22	D	142	148	parallel
Strand 23	A	142	148	first strand
Strand 24	A	135	137	parallel
Strand 25	A	152	156	first strand
Strand 26	A	142	148	parallel
Strand 27	A	162	166	first strand
Strand 28	A	152	156	parallel
Strand 29	A	175	177	first strand
Strand 30	A	135	137	parallel
Strand 31	B	135	137	first strand
Strand 32	B	142	148	parallel
Strand 33	B	142	148	first strand
Strand 34	B	135	137	parallel
Strand 35	B	152	156	first strand
Strand 36	B	142	148	parallel
Strand 37	B	162	166	first strand
Strand 38	A	175	177	parallel
Strand 39	B	175	177	first strand
Strand 40	B	135	137	parallel
Strand 41	C	135	137	first strand
Strand 42	C	142	148	parallel
Strand 43	C	142	148	first strand
Strand 44	C	135	137	parallel
Strand 45	C	152	156	first strand
Strand 46	C	142	148	parallel
Strand 47	C	162	166	first strand
Strand 48	B	175	177	parallel
Strand 49	C	175	177	first strand
Strand 50	C	135	137	parallel
Strand 51	D	135	137	first strand
Strand 52	D	142	148	parallel
Strand 53	D	142	148	first strand
Strand 54	D	135	137	parallel
Strand 55	D	152	156	first strand
Strand 56	D	142	148	parallel
Strand 57	D	162	166	first strand
Strand 58	C	175	177	parallel
Strand 59	D	175	177	first strand
Strand 60	D	135	137	parallel
Strand 61	E	135	137	first strand
Strand 62	E	142	148	parallel
Strand 63	E	142	148	first strand
Strand 64	E	135	137	parallel
Strand 65	E	152	156	first strand
Strand 66	E	142	148	parallel
Strand 67	E	162	166	first strand
Strand 68	D	175	177	parallel
Strand 69	E	175	177	first strand
Strand 70	E	135	137	parallel
Strand 71	F	135	137	first strand
Strand 72	F	142	148	parallel
Strand 73	F	142	148	first strand
Strand 74	F	135	137	parallel
Strand 75	F	152	156	first strand
Strand 76	F	142	148	parallel
Strand 77	F	162	166	first strand
Strand 78	E	175	177	parallel
Strand 79	F	175	177	first strand
Strand 80	F	135	137	parallel
Strand 81	G	135	137	first strand
Strand 82	G	142	148	parallel
Strand 83	G	142	148	first strand
Strand 84	G	135	137	parallel
Strand 85	G	152	156	first strand
Strand 86	G	142	148	parallel
Strand 87	G	162	166	first strand
Strand 88	F	175	177	parallel
Strand 89	G	175	177	first strand
Strand 90	A	162	166	parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	192	first strand
Strand 2	A	233	242	anti-parallel
Strand 3	A	221	228	anti-parallel

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There are 14 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	278	first strand
Strand 2	G	272	278	parallel
Strand 3	B	272	278	first strand
Strand 4	A	272	278	parallel
Strand 5	C	272	278	first strand
Strand 6	B	272	278	parallel
Strand 7	D	272	278	first strand
Strand 8	C	272	278	parallel
Strand 9	E	272	279	first strand
Strand 10	D	272	278	parallel
Strand 11	F	272	279	first strand
Strand 12	E	272	279	parallel
Strand 13	G	272	278	first strand
Strand 14	A	272	278	parallel

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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	192	first strand
Strand 2	B	233	242	anti-parallel
Strand 3	B	221	228	anti-parallel

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There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	192	first strand
Strand 2	C	233	242	anti-parallel
Strand 3	C	221	228	anti-parallel

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There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	183	192	first strand
Strand 2	D	233	242	anti-parallel
Strand 3	D	221	228	anti-parallel

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There are 3 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	183	192	first strand
Strand 2	E	233	242	anti-parallel
Strand 3	E	221	228	anti-parallel

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There are 3 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	183	192	first strand
Strand 2	F	233	242	anti-parallel
Strand 3	F	221	228	anti-parallel

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There are 3 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	183	192	first strand
Strand 2	G	233	242	anti-parallel
Strand 3	G	221	228	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2VV5

Analysis of interatomic Contacts of Structural Units in PDB entry:
2VV5