Analysis of interatomic Contacts of Structural Units in PDB entry:
2VVF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2VVF entry

There are 6 chains in PDB entry 2VVF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PHE 269
B	MET 1	PHE 269
C	MET 1	PHE 269
D	MET 1	PHE 269
E	MET 1	PHE 269
F	MET 1	PHE 269

There are 30 helices in PDB entry 2VVF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	40	42	Right-handed 310
Helix 2	2	A	62	72	Right-handed alpha
Helix 3	3	A	96	103	Right-handed alpha
Helix 4	4	A	200	210	Right-handed alpha
Helix 5	5	A	228	232	Right-handed 310
Helix 6	6	B	40	42	Right-handed 310
Helix 7	7	B	62	72	Right-handed alpha
Helix 8	8	B	96	103	Right-handed alpha
Helix 9	9	B	200	210	Right-handed alpha
Helix 10	10	B	228	232	Right-handed 310
Helix 11	11	C	40	42	Right-handed 310
Helix 12	12	C	62	72	Right-handed alpha
Helix 13	13	C	96	103	Right-handed alpha
Helix 14	14	C	200	210	Right-handed alpha
Helix 15	15	C	228	232	Right-handed 310
Helix 16	16	D	40	42	Right-handed 310
Helix 17	17	D	62	72	Right-handed alpha
Helix 18	18	D	96	103	Right-handed alpha
Helix 19	19	D	200	210	Right-handed alpha
Helix 20	20	D	228	232	Right-handed 310
Helix 21	21	E	40	42	Right-handed 310
Helix 22	22	E	62	72	Right-handed alpha
Helix 23	23	E	96	103	Right-handed alpha
Helix 24	24	E	200	210	Right-handed alpha
Helix 25	25	E	228	232	Right-handed 310
Helix 26	26	F	40	42	Right-handed 310
Helix 27	27	F	62	72	Right-handed alpha
Helix 28	28	F	96	103	Right-handed alpha
Helix 29	29	F	200	210	Right-handed alpha
Helix 30	30	F	228	232	Right-handed 310

There are 27 sheets in PDB entry 2VVF. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE, CA, CB, CC, CD, A, DB, C, DD, EA, EB, EC, ED, FA, FB, FC, FD,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	6	first strand
Strand 2	A	128	136	anti-parallel
Strand 3	A	28	37	anti-parallel
Strand 4	A	106	107	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	6	first strand
Strand 2	A	128	136	anti-parallel
Strand 3	A	28	37	anti-parallel
Strand 4	A	80	84	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	23	first strand
Strand 2	A	114	120	anti-parallel
Strand 3	A	44	51	anti-parallel
Strand 4	A	54	61	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	154	first strand
Strand 2	A	252	263	anti-parallel
Strand 3	A	171	178	anti-parallel
Strand 4	A	233	234	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	154	first strand
Strand 2	A	252	263	anti-parallel
Strand 3	A	171	178	anti-parallel
Strand 4	A	218	222	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	161	first strand
Strand 2	A	242	248	anti-parallel
Strand 3	A	182	189	anti-parallel
Strand 4	A	192	199	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	6	first strand
Strand 2	B	128	136	anti-parallel
Strand 3	B	28	37	anti-parallel
Strand 4	B	106	107	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	6	first strand
Strand 2	B	128	136	anti-parallel
Strand 3	B	28	37	anti-parallel
Strand 4	B	80	84	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	23	first strand
Strand 2	B	114	120	anti-parallel
Strand 3	B	44	51	anti-parallel
Strand 4	B	54	61	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	143	154	first strand
Strand 2	B	252	263	anti-parallel
Strand 3	B	171	178	anti-parallel
Strand 4	B	218	222	anti-parallel
Strand 5	B	171	178	anti-parallel
Strand 6	B	233	234	anti-parallel
Strand 7	B	171	178	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	161	first strand
Strand 2	B	242	248	anti-parallel
Strand 3	B	182	189	anti-parallel
Strand 4	B	192	199	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	128	136	anti-parallel
Strand 3	C	28	37	anti-parallel
Strand 4	C	80	84	anti-parallel
Strand 5	C	28	37	anti-parallel
Strand 6	C	106	107	anti-parallel
Strand 7	C	28	37	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	23	first strand
Strand 2	C	114	120	anti-parallel
Strand 3	C	44	51	anti-parallel
Strand 4	C	54	61	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	154	first strand
Strand 2	C	252	263	anti-parallel
Strand 3	C	171	178	anti-parallel
Strand 4	C	218	222	anti-parallel
Strand 5	C	171	178	anti-parallel
Strand 6	C	233	234	anti-parallel
Strand 7	C	171	178	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	161	first strand
Strand 2	C	242	248	anti-parallel
Strand 3	C	182	189	anti-parallel
Strand 4	C	192	199	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	128	136	anti-parallel
Strand 3	D	28	37	anti-parallel
Strand 4	D	80	84	anti-parallel
Strand 5	D	28	37	anti-parallel
Strand 6	D	106	107	anti-parallel
Strand 7	D	28	37	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	23	first strand
Strand 2	D	114	120	anti-parallel
Strand 3	D	44	51	anti-parallel
Strand 4	D	54	61	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	143	154	first strand
Strand 2	D	252	263	anti-parallel
Strand 3	D	171	178	anti-parallel
Strand 4	D	218	222	anti-parallel
Strand 5	D	171	178	anti-parallel
Strand 6	D	233	234	anti-parallel
Strand 7	D	171	178	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	161	first strand
Strand 2	D	242	248	anti-parallel
Strand 3	D	182	189	anti-parallel
Strand 4	D	192	199	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	6	first strand
Strand 2	E	128	136	anti-parallel
Strand 3	E	28	37	anti-parallel
Strand 4	E	80	84	anti-parallel
Strand 5	E	28	37	anti-parallel
Strand 6	E	106	107	anti-parallel
Strand 7	E	28	37	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	18	23	first strand
Strand 2	E	114	120	anti-parallel
Strand 3	E	44	51	anti-parallel
Strand 4	E	54	61	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	143	154	first strand
Strand 2	E	252	263	anti-parallel
Strand 3	E	171	178	anti-parallel
Strand 4	E	218	222	anti-parallel
Strand 5	E	171	178	anti-parallel
Strand 6	E	233	234	anti-parallel
Strand 7	E	171	178	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in ED sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	157	161	first strand
Strand 2	E	242	248	anti-parallel
Strand 3	E	182	189	anti-parallel
Strand 4	E	192	199	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	6	first strand
Strand 2	F	128	136	anti-parallel
Strand 3	F	28	37	anti-parallel
Strand 4	F	80	84	anti-parallel
Strand 5	F	28	37	anti-parallel
Strand 6	F	106	107	anti-parallel
Strand 7	F	28	37	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	23	first strand
Strand 2	F	114	120	anti-parallel
Strand 3	F	44	51	anti-parallel
Strand 4	F	54	61	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	143	154	first strand
Strand 2	F	252	263	anti-parallel
Strand 3	F	171	178	anti-parallel
Strand 4	F	218	222	anti-parallel
Strand 5	F	171	178	anti-parallel
Strand 6	F	233	234	anti-parallel
Strand 7	F	171	178	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in FD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	157	161	first strand
Strand 2	F	242	248	anti-parallel
Strand 3	F	182	189	anti-parallel
Strand 4	F	192	199	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2VVF

Analysis of interatomic Contacts of Structural Units in PDB entry:
2VVF