Analysis of interatomic Contacts of Structural Units in PDB entry:
2VVG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VVG entry

There are 2 chains in PDB entry 2VVG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 4ILE 350
B
 ASP 4ILE 350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 2VVG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 22Right-handed alpha
Helix 2
2
A
32 34Right-handed 310
Helix 3
3
A
69 77Right-handed alpha
Helix 4
4
A
78 87Right-handed alpha
Helix 5
5
A
102 108Right-handed alpha
Helix 6
6
A
115 130Right-handed alpha
Helix 7
7
A
183 198Right-handed alpha
Helix 8
8
A
265 281Right-handed alpha
Helix 9
9
A
286 289Right-handed 310
Helix 10
10
A
290 296Right-handed alpha
Helix 11
11
A
318 333Right-handed alpha
Helix 12
12
B
16 22Right-handed alpha
Helix 13
13
B
32 34Right-handed 310
Helix 14
14
B
69 77Right-handed alpha
Helix 15
15
B
78 88Right-handed alpha
Helix 16
16
B
102 108Right-handed alpha
Helix 17
17
B
115 130Right-handed alpha
Helix 18
18
B
183 198Right-handed alpha
Helix 19
19
B
265 280Right-handed alpha
Helix 20
20
B
286 289Right-handed 310
Helix 21
21
B
290 296Right-handed alpha
Helix 22
22
B
318 333Right-handed alpha
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There are 8 sheets in PDB entry 2VVG. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
7 12parallel
Strand 3
A
305 312parallel
Strand 4
A
91 96parallel
Strand 5
A
231 241parallel
Strand 6
A
213 224anti-parallel
Strand 7
A
135 147anti-parallel
Strand 8
A
179 181anti-parallel
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There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
7 12parallel
Strand 3
A
305 312parallel
Strand 4
A
91 96parallel
Strand 5
A
231 241parallel
Strand 6
A
213 224anti-parallel
Strand 7
A
135 147anti-parallel
Strand 8
A
150 153anti-parallel
Strand 9
A
158 161anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 31first strand
Strand 2
A
36 39anti-parallel
Strand 3
A
56 59anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 166first strand
Strand 2
A
170 173anti-parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 64first strand
Strand 2
B
7 12parallel
Strand 3
B
305 312parallel
Strand 4
B
91 96parallel
Strand 5
B
230 241parallel
Strand 6
B
213 225anti-parallel
Strand 7
B
136 147anti-parallel
Strand 8
B
179 181anti-parallel
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There are 8 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 64first strand
Strand 2
B
7 12parallel
Strand 3
B
305 312parallel
Strand 4
B
91 96parallel
Strand 5
B
230 241parallel
Strand 6
B
213 225anti-parallel
Strand 7
B
136 147anti-parallel
Strand 8
B
150 153anti-parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 31first strand
Strand 2
B
36 39anti-parallel
Strand 3
B
56 59anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 166first strand
Strand 2
B
170 173anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il