Analysis of interatomic Contacts of Structural Units in PDB entry:
2VVI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VVI entry

There are 8 chains in PDB entry 2VVI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2PHE 61
A
 ASN 65PRO 221
B
 SER 2PHE 61
B
 ASN 65ASN 223
C
 HIS -1PHE 61
C
 ASN 65ASN 223
D
 MET 1PHE 61
D
 ASN 65ASP 222
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 2VVI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
53 61Right-handed 310
Helix 2
2
A
79 83Right-handed 310
Helix 3
3
B
53 58Right-handed 310
Helix 4
4
B
79 83Right-handed 310
Helix 5
5
C
33 35Right-handed 310
Helix 6
6
C
53 57Right-handed 310
Helix 7
7
C
79 83Right-handed 310
Helix 8
8
D
53 58Right-handed 310
Helix 9
9
D
79 83Right-handed 310
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There are 4 sheets in PDB entry 2VVI. Click on sheet of interest to get list of strands forming it: AA, BA, CA, DA,

There are 30 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 18first strand
Strand 2
A
21 32anti-parallel
Strand 3
A
37 46anti-parallel
Strand 4
A
207 217anti-parallel
Strand 5
A
190 201anti-parallel
Strand 6
A
142 149anti-parallel
Strand 7
A
152 163parallel
Strand 8
A
136 139anti-parallel
Strand 9
A
21 32first strand
Strand 10
A
8 18anti-parallel
Strand 11
A
37 46first strand
Strand 12
A
21 32anti-parallel
Strand 13
A
87 95first strand
Strand 14
A
100 110anti-parallel
Strand 15
A
100 110first strand
Strand 16
A
87 95anti-parallel
Strand 17
A
113 123first strand
Strand 18
A
8 18parallel
Strand 19
A
136 139first strand
Strand 20
A
152 163anti-parallel
Strand 21
A
142 149anti-parallel
Strand 22
A
190 201anti-parallel
Strand 23
A
152 163first strand
Strand 24
A
136 139anti-parallel
Strand 25
A
168 179first strand
Strand 26
A
87 95anti-parallel
Strand 27
A
190 201first strand
Strand 28
A
142 149anti-parallel
Strand 29
A
207 217first strand
Strand 30
A
37 46anti-parallel
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There are 24 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 18first strand
Strand 2
B
21 32anti-parallel
Strand 3
B
21 32first strand
Strand 4
B
8 18anti-parallel
Strand 5
B
37 46first strand
Strand 6
B
21 32anti-parallel
Strand 7
B
87 95first strand
Strand 8
B
100 110anti-parallel
Strand 9
B
100 110first strand
Strand 10
B
87 95anti-parallel
Strand 11
B
113 123first strand
Strand 12
B
8 18parallel
Strand 13
B
136 139first strand
Strand 14
B
152 163anti-parallel
Strand 15
B
142 149anti-parallel
Strand 16
B
190 201anti-parallel
Strand 17
B
152 163first strand
Strand 18
B
136 139anti-parallel
Strand 19
B
168 179first strand
Strand 20
B
87 95anti-parallel
Strand 21
B
190 201first strand
Strand 22
B
142 149anti-parallel
Strand 23
B
207 217first strand
Strand 24
B
37 46anti-parallel
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There are 24 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 18first strand
Strand 2
C
21 32anti-parallel
Strand 3
C
21 32first strand
Strand 4
C
8 18anti-parallel
Strand 5
C
37 46first strand
Strand 6
C
21 32anti-parallel
Strand 7
C
87 95first strand
Strand 8
C
100 110anti-parallel
Strand 9
C
100 110first strand
Strand 10
C
87 95anti-parallel
Strand 11
C
113 123first strand
Strand 12
C
8 18parallel
Strand 13
C
136 139first strand
Strand 14
C
152 163anti-parallel
Strand 15
C
142 149anti-parallel
Strand 16
C
190 201anti-parallel
Strand 17
C
152 163first strand
Strand 18
C
136 139anti-parallel
Strand 19
C
168 179first strand
Strand 20
C
87 95anti-parallel
Strand 21
C
190 201first strand
Strand 22
C
142 149anti-parallel
Strand 23
C
207 217first strand
Strand 24
C
37 46anti-parallel
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There are 24 strands in DA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
8 18first strand
Strand 2
D
21 31anti-parallel
Strand 3
D
21 31first strand
Strand 4
D
8 18anti-parallel
Strand 5
D
37 46first strand
Strand 6
D
21 31anti-parallel
Strand 7
D
87 95first strand
Strand 8
D
100 110anti-parallel
Strand 9
D
100 110first strand
Strand 10
D
87 95anti-parallel
Strand 11
D
113 123first strand
Strand 12
D
8 18parallel
Strand 13
D
136 139first strand
Strand 14
D
152 163anti-parallel
Strand 15
D
142 149anti-parallel
Strand 16
D
190 201anti-parallel
Strand 17
D
152 163first strand
Strand 18
D
136 139anti-parallel
Strand 19
D
168 179first strand
Strand 20
D
87 95anti-parallel
Strand 21
D
190 201first strand
Strand 22
D
142 149anti-parallel
Strand 23
D
207 217first strand
Strand 24
D
37 46anti-parallel
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