Analysis of interatomic Contacts of Structural Units in PDB entry:
2VVL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2VVL entry

There are 8 chains in PDB entry 2VVL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 486
B	MET 1	GLU 484
C	THR 2	GLU 484
D	MET 1	GLU 484
E	MET 1	GLU 484
F	THR 2	GLU 484
G	MET 1	LEU 485
H	MET 1	LEU 485

There are150 helices in PDB entry 2VVL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	48	61	Right-handed alpha
Helix 2	2	A	99	109	Right-handed alpha
Helix 3	3	A	141	158	Right-handed alpha
Helix 4	4	A	179	185	Right-handed alpha
Helix 5	5	A	187	196	Right-handed alpha
Helix 6	6	A	197	199	Right-handed 310
Helix 7	7	A	200	216	Right-handed alpha
Helix 8	8	A	223	234	Right-handed alpha
Helix 9	9	A	237	247	Right-handed alpha
Helix 10	10	A	253	268	Right-handed alpha
Helix 11	11	A	309	316	Right-handed 310
Helix 12	12	A	323	333	Right-handed alpha
Helix 13	13	A	347	351	Right-handed 310
Helix 14	14	A	384	388	Right-handed 310
Helix 15	15	A	394	404	Right-handed alpha
Helix 16	16	A	436	447	Right-handed alpha
Helix 17	17	A	456	460	Right-handed 310
Helix 18	18	A	466	485	Right-handed alpha
Helix 19	19	B	48	61	Right-handed alpha
Helix 20	20	B	99	109	Right-handed alpha
Helix 21	21	B	141	158	Right-handed alpha
Helix 22	22	B	177	179	Right-handed 310
Helix 23	23	B	180	185	Right-handed alpha
Helix 24	24	B	187	196	Right-handed alpha
Helix 25	25	B	197	199	Right-handed 310
Helix 26	26	B	200	216	Right-handed alpha
Helix 27	27	B	223	234	Right-handed alpha
Helix 28	28	B	237	247	Right-handed alpha
Helix 29	29	B	253	267	Right-handed alpha
Helix 30	30	B	309	316	Right-handed 310
Helix 31	31	B	323	333	Right-handed alpha
Helix 32	32	B	347	352	Right-handed 310
Helix 33	33	B	384	388	Right-handed 310
Helix 34	34	B	394	404	Right-handed alpha
Helix 35	35	B	436	446	Right-handed alpha
Helix 36	36	B	456	460	Right-handed 310
Helix 37	37	B	466	481	Right-handed alpha
Helix 38	38	C	48	61	Right-handed alpha
Helix 39	39	C	99	109	Right-handed alpha
Helix 40	40	C	141	158	Right-handed alpha
Helix 41	41	C	179	185	Right-handed alpha
Helix 42	42	C	187	194	Right-handed alpha
Helix 43	43	C	195	199	Right-handed 310
Helix 44	44	C	200	216	Right-handed alpha
Helix 45	45	C	223	234	Right-handed alpha
Helix 46	46	C	237	247	Right-handed alpha
Helix 47	47	C	253	268	Right-handed alpha
Helix 48	48	C	309	314	Right-handed alpha
Helix 49	49	C	323	333	Right-handed alpha
Helix 50	50	C	347	352	Right-handed 310
Helix 51	51	C	384	388	Right-handed 310
Helix 52	52	C	394	404	Right-handed alpha
Helix 53	53	C	436	442	Right-handed alpha
Helix 54	54	C	443	447	Right-handed 310
Helix 55	55	C	456	460	Right-handed 310
Helix 56	56	C	466	481	Right-handed alpha
Helix 57	57	D	48	61	Right-handed alpha
Helix 58	58	D	99	109	Right-handed alpha
Helix 59	59	D	141	158	Right-handed alpha
Helix 60	60	D	177	179	Right-handed 310
Helix 61	61	D	180	185	Right-handed alpha
Helix 62	62	D	187	196	Right-handed alpha
Helix 63	63	D	197	199	Right-handed 310
Helix 64	64	D	200	216	Right-handed alpha
Helix 65	65	D	223	234	Right-handed alpha
Helix 66	66	D	237	247	Right-handed alpha
Helix 67	67	D	253	268	Right-handed alpha
Helix 68	68	D	309	314	Right-handed alpha
Helix 69	69	D	323	333	Right-handed alpha
Helix 70	70	D	347	351	Right-handed 310
Helix 71	71	D	384	388	Right-handed 310
Helix 72	72	D	394	405	Right-handed alpha
Helix 73	73	D	436	447	Right-handed alpha
Helix 74	74	D	456	460	Right-handed 310
Helix 75	75	D	466	481	Right-handed alpha
Helix 76	76	E	48	61	Right-handed alpha
Helix 77	77	E	99	109	Right-handed alpha
Helix 78	78	E	141	158	Right-handed alpha
Helix 79	79	E	177	179	Right-handed 310
Helix 80	80	E	180	185	Right-handed alpha
Helix 81	81	E	187	196	Right-handed alpha
Helix 82	82	E	197	199	Right-handed 310
Helix 83	83	E	200	216	Right-handed alpha
Helix 84	84	E	223	235	Right-handed alpha
Helix 85	85	E	237	247	Right-handed alpha
Helix 86	86	E	252	267	Right-handed alpha
Helix 87	87	E	309	316	Right-handed 310
Helix 88	88	E	323	333	Right-handed alpha
Helix 89	89	E	347	352	Right-handed 310
Helix 90	90	E	394	404	Right-handed alpha
Helix 91	91	E	436	447	Right-handed alpha
Helix 92	92	E	456	460	Right-handed 310
Helix 93	93	E	466	481	Right-handed alpha
Helix 94	94	F	48	61	Right-handed alpha
Helix 95	95	F	99	109	Right-handed alpha
Helix 96	96	F	141	158	Right-handed alpha
Helix 97	97	F	177	179	Right-handed 310
Helix 98	98	F	180	185	Right-handed alpha
Helix 99	99	F	187	194	Right-handed alpha
Helix 100	100	F	195	199	Right-handed 310
Helix 101	101	F	200	216	Right-handed alpha
Helix 102	102	F	223	234	Right-handed alpha
Helix 103	103	F	237	247	Right-handed alpha
Helix 104	104	F	253	268	Right-handed alpha
Helix 105	105	F	312	316	Right-handed 310
Helix 106	106	F	323	333	Right-handed alpha
Helix 107	107	F	347	352	Right-handed 310
Helix 108	108	F	384	388	Right-handed 310
Helix 109	109	F	394	404	Right-handed alpha
Helix 110	110	F	436	447	Right-handed alpha
Helix 111	111	F	456	460	Right-handed 310
Helix 112	112	F	466	484	Right-handed alpha
Helix 113	113	G	48	61	Right-handed alpha
Helix 114	114	G	99	109	Right-handed alpha
Helix 115	115	G	141	158	Right-handed alpha
Helix 116	116	G	177	179	Right-handed 310
Helix 117	117	G	180	185	Right-handed alpha
Helix 118	118	G	187	196	Right-handed alpha
Helix 119	119	G	197	199	Right-handed 310
Helix 120	120	G	200	216	Right-handed alpha
Helix 121	121	G	223	234	Right-handed alpha
Helix 122	122	G	237	247	Right-handed alpha
Helix 123	123	G	253	267	Right-handed alpha
Helix 124	124	G	309	316	Right-handed 310
Helix 125	125	G	323	333	Right-handed alpha
Helix 126	126	G	347	352	Right-handed 310
Helix 127	127	G	384	388	Right-handed 310
Helix 128	128	G	394	404	Right-handed alpha
Helix 129	129	G	436	447	Right-handed alpha
Helix 130	130	G	456	460	Right-handed 310
Helix 131	131	G	466	484	Right-handed alpha
Helix 132	132	H	48	61	Right-handed alpha
Helix 133	133	H	99	109	Right-handed alpha
Helix 134	134	H	141	158	Right-handed alpha
Helix 135	135	H	177	179	Right-handed 310
Helix 136	136	H	180	185	Right-handed alpha
Helix 137	137	H	187	196	Right-handed alpha
Helix 138	138	H	197	199	Right-handed 310
Helix 139	139	H	200	216	Right-handed alpha
Helix 140	140	H	223	234	Right-handed alpha
Helix 141	141	H	237	247	Right-handed alpha
Helix 142	142	H	253	268	Right-handed alpha
Helix 143	143	H	309	316	Right-handed 310
Helix 144	144	H	323	333	Right-handed alpha
Helix 145	145	H	347	352	Right-handed 310
Helix 146	146	H	384	388	Right-handed 310
Helix 147	147	H	394	404	Right-handed alpha
Helix 148	148	H	436	447	Right-handed alpha
Helix 149	149	H	456	460	Right-handed 310
Helix 150	150	H	466	485	Right-handed alpha

There are 39 sheets in PDB entry 2VVL. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE, CA, CB, CC, CD, CE, A, DB, C, DD, DE, EA, EB, EC, ED, EE, FA, FB, FC, FD, FE, GA, GB, GC, GD, GE, HA, HB, HC, HD,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	17	first strand
Strand 2	A	7	10	anti-parallel
Strand 3	A	412	417	anti-parallel
Strand 4	A	339	345	anti-parallel
Strand 5	A	377	383	anti-parallel
Strand 6	A	365	371	anti-parallel
Strand 7	A	353	357	anti-parallel
Strand 8	A	127	131	parallel
Strand 9	A	138	140	anti-parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	274	first strand
Strand 2	A	65	68	parallel
Strand 3	A	42	45	parallel
Strand 4	A	303	306	parallel
Strand 5	A	452	454	parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	83	first strand
Strand 2	A	86	89	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	117	first strand
Strand 2	A	248	250	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	301	first strand
Strand 2	A	289	293	anti-parallel
Strand 3	A	279	284	anti-parallel
Strand 4	A	317	319	parallel

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There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	17	first strand
Strand 2	B	7	9	anti-parallel
Strand 3	B	412	417	anti-parallel
Strand 4	B	339	345	anti-parallel
Strand 5	B	377	383	anti-parallel
Strand 6	B	365	371	anti-parallel
Strand 7	B	354	357	anti-parallel
Strand 8	B	128	131	parallel
Strand 9	B	138	140	anti-parallel

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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	274	first strand
Strand 2	B	65	68	parallel
Strand 3	B	42	45	parallel
Strand 4	B	303	306	parallel
Strand 5	B	452	454	parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	83	first strand
Strand 2	B	86	89	anti-parallel

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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	117	first strand
Strand 2	B	248	250	anti-parallel

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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	301	first strand
Strand 2	B	289	293	anti-parallel
Strand 3	B	279	284	anti-parallel
Strand 4	B	317	319	parallel

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There are 9 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	17	first strand
Strand 2	C	7	10	anti-parallel
Strand 3	C	412	417	anti-parallel
Strand 4	C	339	345	anti-parallel
Strand 5	C	377	383	anti-parallel
Strand 6	C	365	371	anti-parallel
Strand 7	C	354	357	anti-parallel
Strand 8	C	128	131	parallel
Strand 9	C	138	140	anti-parallel

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There are 7 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	275	first strand
Strand 2	C	65	69	parallel
Strand 3	C	40	45	parallel
Strand 4	C	298	306	parallel
Strand 5	C	288	293	anti-parallel
Strand 6	C	279	285	anti-parallel
Strand 7	C	317	319	parallel

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There are 5 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	275	first strand
Strand 2	C	65	69	parallel
Strand 3	C	40	45	parallel
Strand 4	C	298	306	parallel
Strand 5	C	452	454	parallel

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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	83	first strand
Strand 2	C	86	89	anti-parallel

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There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	117	first strand
Strand 2	C	248	250	anti-parallel

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There are 9 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	17	first strand
Strand 2	D	7	10	anti-parallel
Strand 3	D	412	417	anti-parallel
Strand 4	D	339	345	anti-parallel
Strand 5	D	377	383	anti-parallel
Strand 6	D	365	371	anti-parallel
Strand 7	D	353	357	anti-parallel
Strand 8	D	127	133	parallel
Strand 9	D	136	140	anti-parallel

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There are 7 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	271	274	first strand
Strand 2	D	65	68	parallel
Strand 3	D	40	45	parallel
Strand 4	D	298	306	parallel
Strand 5	D	289	293	anti-parallel
Strand 6	D	279	284	anti-parallel
Strand 7	D	317	319	parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	271	274	first strand
Strand 2	D	65	68	parallel
Strand 3	D	40	45	parallel
Strand 4	D	298	306	parallel
Strand 5	D	452	454	parallel

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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	83	first strand
Strand 2	D	86	89	anti-parallel

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There are 2 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	117	first strand
Strand 2	D	248	250	anti-parallel

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There are 9 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	14	20	first strand
Strand 2	E	2	10	anti-parallel
Strand 3	E	412	417	anti-parallel
Strand 4	E	339	345	anti-parallel
Strand 5	E	377	383	anti-parallel
Strand 6	E	365	371	anti-parallel
Strand 7	E	354	357	anti-parallel
Strand 8	E	128	133	parallel
Strand 9	E	136	140	anti-parallel

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There are 7 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	274	first strand
Strand 2	E	65	68	parallel
Strand 3	E	40	45	parallel
Strand 4	E	298	306	parallel
Strand 5	E	289	293	anti-parallel
Strand 6	E	279	284	anti-parallel
Strand 7	E	317	319	parallel

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There are 5 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	274	first strand
Strand 2	E	65	68	parallel
Strand 3	E	40	45	parallel
Strand 4	E	298	306	parallel
Strand 5	E	452	454	parallel

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There are 2 strands in ED sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	80	83	first strand
Strand 2	E	86	89	anti-parallel

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There are 2 strands in EE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	115	117	first strand
Strand 2	E	248	250	anti-parallel

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There are 9 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	14	17	first strand
Strand 2	F	7	10	anti-parallel
Strand 3	F	412	417	anti-parallel
Strand 4	F	339	345	anti-parallel
Strand 5	F	377	383	anti-parallel
Strand 6	F	365	371	anti-parallel
Strand 7	F	354	357	anti-parallel
Strand 8	F	128	131	parallel
Strand 9	F	138	140	anti-parallel

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There are 5 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	271	274	first strand
Strand 2	F	65	68	parallel
Strand 3	F	42	45	parallel
Strand 4	F	303	306	parallel
Strand 5	F	452	454	parallel

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There are 2 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	80	83	first strand
Strand 2	F	86	89	anti-parallel

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There are 2 strands in FD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	115	117	first strand
Strand 2	F	248	250	anti-parallel

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There are 4 strands in FE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	298	301	first strand
Strand 2	F	289	293	anti-parallel
Strand 3	F	279	284	anti-parallel
Strand 4	F	317	319	parallel

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There are 9 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	14	20	first strand
Strand 2	G	2	10	anti-parallel
Strand 3	G	412	417	anti-parallel
Strand 4	G	339	345	anti-parallel
Strand 5	G	377	383	anti-parallel
Strand 6	G	365	371	anti-parallel
Strand 7	G	354	357	anti-parallel
Strand 8	G	128	131	parallel
Strand 9	G	138	140	anti-parallel

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There are 5 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	271	275	first strand
Strand 2	G	65	69	parallel
Strand 3	G	42	45	parallel
Strand 4	G	303	306	parallel
Strand 5	G	452	454	parallel

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There are 2 strands in GC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	80	83	first strand
Strand 2	G	86	89	anti-parallel

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There are 2 strands in GD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	115	117	first strand
Strand 2	G	248	250	anti-parallel

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There are 4 strands in GE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	298	301	first strand
Strand 2	G	288	293	anti-parallel
Strand 3	G	279	285	anti-parallel
Strand 4	G	317	319	parallel

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There are 9 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	14	17	first strand
Strand 2	H	7	10	anti-parallel
Strand 3	H	412	417	anti-parallel
Strand 4	H	339	345	anti-parallel
Strand 5	H	377	383	anti-parallel
Strand 6	H	365	371	anti-parallel
Strand 7	H	354	357	anti-parallel
Strand 8	H	128	131	parallel
Strand 9	H	138	140	anti-parallel

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There are 10 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	271	274	first strand
Strand 2	H	65	68	parallel
Strand 3	H	40	45	parallel
Strand 4	H	298	306	parallel
Strand 5	H	317	319	first strand
Strand 6	H	279	285	parallel
Strand 7	H	288	293	anti-parallel
Strand 8	H	298	306	anti-parallel
Strand 9	H	452	454	parallel
Strand 10	H	298	306	parallel

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There are 2 strands in HC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	80	83	first strand
Strand 2	H	86	89	anti-parallel

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There are 2 strands in HD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	115	117	first strand
Strand 2	H	248	250	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2VVL

Analysis of interatomic Contacts of Structural Units in PDB entry:
2VVL