Analysis of interatomic Contacts of Structural Units in PDB entry:
2VW5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VW5 entry

There are 4 chains in PDB entry 2VW5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 214
B
 MET 1GLU 214
C
 MET 1GLU 214
D
 MET 1GLU 214
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 2VW5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 23Right-handed alpha
Helix 2
2
A
28 52Right-handed alpha
Helix 3
3
A
53 59Right-handed 310
Helix 4
4
A
70 72Right-handed 310
Helix 5
5
A
85 93Right-handed alpha
Helix 6
6
A
100 110Right-handed alpha
Helix 7
7
A
113 121Right-handed 310
Helix 8
8
A
122 129Right-handed 310
Helix 9
9
A
179 185Right-handed 310
Helix 10
10
A
186 198Right-handed alpha
Helix 11
11
B
9 23Right-handed alpha
Helix 12
12
B
28 52Right-handed alpha
Helix 13
13
B
53 59Right-handed 310
Helix 14
14
B
70 72Right-handed 310
Helix 15
15
B
85 93Right-handed alpha
Helix 16
16
B
100 110Right-handed alpha
Helix 17
17
B
113 121Right-handed 310
Helix 18
18
B
122 129Right-handed 310
Helix 19
19
B
179 185Right-handed 310
Helix 20
20
B
186 198Right-handed alpha
Helix 21
21
C
9 23Right-handed alpha
Helix 22
22
C
28 50Right-handed alpha
Helix 23
23
C
52 59Right-handed 310
Helix 24
24
C
70 72Right-handed 310
Helix 25
25
C
85 93Right-handed alpha
Helix 26
26
C
100 111Right-handed alpha
Helix 27
27
C
113 121Right-handed 310
Helix 28
28
C
122 129Right-handed 310
Helix 29
29
C
179 185Right-handed 310
Helix 30
30
C
186 198Right-handed alpha
Helix 31
31
D
9 21Right-handed alpha
Helix 32
32
D
28 52Right-handed alpha
Helix 33
33
D
53 57Right-handed 310
Helix 34
34
D
70 72Right-handed 310
Helix 35
35
D
85 93Right-handed alpha
Helix 36
36
D
100 111Right-handed alpha
Helix 37
37
D
113 121Right-handed 310
Helix 38
38
D
122 129Right-handed 310
Helix 39
39
D
181 185Right-handed 310
Helix 40
40
D
186 198Right-handed alpha
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There are 4 sheets in PDB entry 2VW5. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
155 160anti-parallel
Strand 3
A
146 150anti-parallel
Strand 4
A
131 139anti-parallel
Strand 5
A
170 177anti-parallel
Strand 6
A
74 79anti-parallel
Strand 7
A
64 69anti-parallel
Strand 8
A
205 207parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
155 160anti-parallel
Strand 3
B
146 150anti-parallel
Strand 4
B
131 139anti-parallel
Strand 5
B
170 177anti-parallel
Strand 6
B
74 79anti-parallel
Strand 7
B
64 69anti-parallel
Strand 8
B
205 207parallel
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There are 8 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 7first strand
Strand 2
C
155 160anti-parallel
Strand 3
C
146 150anti-parallel
Strand 4
C
131 139anti-parallel
Strand 5
C
170 177anti-parallel
Strand 6
C
74 79anti-parallel
Strand 7
C
64 69anti-parallel
Strand 8
C
205 207parallel
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There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 7first strand
Strand 2
D
155 160anti-parallel
Strand 3
D
146 150anti-parallel
Strand 4
D
131 139anti-parallel
Strand 5
D
170 177anti-parallel
Strand 6
D
74 79anti-parallel
Strand 7
D
64 69anti-parallel
Strand 8
D
205 207parallel
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