Analysis of interatomic Contacts of Structural Units in PDB entry:
2VWB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VWB entry

There are 2 chains in PDB entry 2VWB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 530
B
 MET 1ARG 532
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 2VWB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 63Right-handed alpha
Helix 2
2
A
64 68Right-handed 310
Helix 3
3
A
79 96Right-handed alpha
Helix 4
4
A
106 119Right-handed alpha
Helix 5
5
A
153 165Right-handed alpha
Helix 6
6
A
171 180Right-handed alpha
Helix 7
7
A
199 212Right-handed alpha
Helix 8
8
A
215 240Right-handed alpha
Helix 9
9
A
251 255Right-handed 310
Helix 10
10
A
256 269Right-handed alpha
Helix 11
11
A
278 282Right-handed 310
Helix 12
12
A
285 299Right-handed alpha
Helix 13
13
A
304 308Right-handed 310
Helix 14
14
A
369 391Right-handed alpha
Helix 15
15
A
392 395Right-handed 310
Helix 16
16
A
421 426Right-handed alpha
Helix 17
17
A
429 445Right-handed alpha
Helix 18
18
A
476 495Right-handed alpha
Helix 19
19
A
498 512Right-handed alpha
Helix 20
20
A
516 528Right-handed alpha
Helix 21
21
B
45 50Right-handed alpha
Helix 22
22
B
51 63Right-handed alpha
Helix 23
23
B
64 68Right-handed 310
Helix 24
24
B
79 98Right-handed alpha
Helix 25
25
B
106 117Right-handed alpha
Helix 26
26
B
153 165Right-handed alpha
Helix 27
27
B
171 180Right-handed alpha
Helix 28
28
B
199 212Right-handed alpha
Helix 29
29
B
215 243Right-handed alpha
Helix 30
30
B
251 255Right-handed 310
Helix 31
31
B
256 269Right-handed alpha
Helix 32
32
B
278 283Right-handed alpha
Helix 33
33
B
285 299Right-handed alpha
Helix 34
34
B
304 309Right-handed 310
Helix 35
35
B
315 319Right-handed 310
Helix 36
36
B
369 391Right-handed alpha
Helix 37
37
B
392 395Right-handed 310
Helix 38
38
B
406 408Right-handed 310
Helix 39
39
B
421 425Right-handed alpha
Helix 40
40
B
429 445Right-handed alpha
Helix 41
41
B
476 495Right-handed alpha
Helix 42
42
B
498 514Right-handed alpha
Helix 43
43
B
516 530Right-handed alpha
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There are 12 sheets in PDB entry 2VWB. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE, BF,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 30first strand
Strand 2
A
13 19anti-parallel
Strand 3
A
2 7anti-parallel
Strand 4
A
70 76parallel
Strand 5
A
101 105parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 148first strand
Strand 2
A
133 139anti-parallel
Strand 3
A
124 128anti-parallel
Strand 4
A
246 250parallel
Strand 5
A
273 275parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 193first strand
Strand 2
A
196 197anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 351first strand
Strand 2
A
356 362anti-parallel
Strand 3
A
410 414anti-parallel
Strand 4
A
401 405anti-parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 420first strand
Strand 2
A
457 459anti-parallel
Strand 3
A
463 465anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
447 448first strand
Strand 2
A
472 473anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 30first strand
Strand 2
B
13 19anti-parallel
Strand 3
B
2 7anti-parallel
Strand 4
B
70 76parallel
Strand 5
B
101 105parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 148first strand
Strand 2
B
133 138anti-parallel
Strand 3
B
124 128anti-parallel
Strand 4
B
246 250parallel
Strand 5
B
273 275parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 193first strand
Strand 2
B
196 197anti-parallel
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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
345 352first strand
Strand 2
B
355 362anti-parallel
Strand 3
B
410 414anti-parallel
Strand 4
B
401 405anti-parallel
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There are 3 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
419 420first strand
Strand 2
B
457 459anti-parallel
Strand 3
B
463 465anti-parallel
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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
447 448first strand
Strand 2
B
472 473anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il