Analysis of interatomic Contacts of Structural Units in PDB entry:
2VWG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VWG entry

There is 1 chain in PDB entry 2VWG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 2VWG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
38 46Right-handed alpha
Helix 2
2
A
96 101Right-handed alpha
Helix 3
3
A
103 107Right-handed 310
Helix 4
4
A
139 143Right-handed 310
Helix 5
5
A
145 147Right-handed 310
Helix 6
6
A
148 166Right-handed alpha
Helix 7
7
A
182 194Right-handed alpha
Helix 8
8
A
212 221Right-handed alpha
Helix 9
9
A
232 234Right-handed 310
Helix 10
10
A
235 240Right-handed alpha
Helix 11
11
A
252 262Right-handed alpha
Helix 12
12
A
283 294Right-handed alpha
Helix 13
13
A
305 319Right-handed alpha
Helix 14
14
A
320 327Right-handed alpha
Helix 15
15
A
335 342Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 2VWG. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 17first strand
Strand 2
A
2 7anti-parallel
Strand 3
A
58 60anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 131first strand
Strand 2
A
27 37anti-parallel
Strand 3
A
64 71anti-parallel
Strand 4
A
82 85anti-parallel
Strand 5
A
135 137anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 131first strand
Strand 2
A
27 37anti-parallel
Strand 3
A
349 353anti-parallel
Strand 4
A
328 333parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 89first strand
Strand 2
A
113 114anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 227first strand
Strand 2
A
201 206parallel
Strand 3
A
175 179parallel
Strand 4
A
243 248parallel
Strand 5
A
263 271parallel
Strand 6
A
297 300parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il