Analysis of interatomic Contacts of Structural Units in PDB entry:
2VWT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VWT entry

There are 3 chains in PDB entry 2VWT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 256
B
 MET 1SER 256
C
 MET 1SER 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 42 helices in PDB entry 2VWT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 15Right-handed alpha
Helix 2
2
A
28 37Right-handed alpha
Helix 3
3
A
53 65Right-handed alpha
Helix 4
4
A
79 89Right-handed alpha
Helix 5
5
A
101 113Right-handed alpha
Helix 6
6
A
123 127Right-handed 310
Helix 7
7
A
127 134Right-handed 310
Helix 8
8
A
137 146Right-handed alpha
Helix 9
9
A
154 160Right-handed alpha
Helix 10
10
A
160 166Right-handed alpha
Helix 11
11
A
176 184Right-handed alpha
Helix 12
12
A
192 209Right-handed alpha
Helix 13
13
A
219 229Right-handed alpha
Helix 14
14
A
239 253Right-handed alpha
Helix 15
15
B
7 16Right-handed alpha
Helix 16
16
B
28 37Right-handed alpha
Helix 17
17
B
53 65Right-handed alpha
Helix 18
18
B
79 89Right-handed alpha
Helix 19
19
B
101 113Right-handed alpha
Helix 20
20
B
123 127Right-handed 310
Helix 21
21
B
127 134Right-handed 310
Helix 22
22
B
137 146Right-handed alpha
Helix 23
23
B
154 160Right-handed alpha
Helix 24
24
B
160 166Right-handed alpha
Helix 25
25
B
176 185Right-handed alpha
Helix 26
26
B
192 209Right-handed alpha
Helix 27
27
B
219 229Right-handed alpha
Helix 28
28
B
239 253Right-handed alpha
Helix 29
29
C
7 15Right-handed alpha
Helix 30
30
C
28 37Right-handed alpha
Helix 31
31
C
53 65Right-handed alpha
Helix 32
32
C
79 89Right-handed alpha
Helix 33
33
C
101 112Right-handed alpha
Helix 34
34
C
123 127Right-handed 310
Helix 35
35
C
127 134Right-handed 310
Helix 36
36
C
137 146Right-handed alpha
Helix 37
37
C
154 160Right-handed alpha
Helix 38
38
C
160 167Right-handed alpha
Helix 39
39
C
176 184Right-handed alpha
Helix 40
40
C
195 209Right-handed alpha
Helix 41
41
C
219 230Right-handed alpha
Helix 42
42
C
239 253Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 2VWT. Click on sheet of interest to get list of strands forming it: AA, BA, CA,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 24first strand
Strand 2
A
233 238parallel
Strand 3
A
212 216parallel
Strand 4
A
172 175parallel
Strand 5
A
147 152parallel
Strand 6
A
93 96parallel
Strand 7
A
70 74parallel
Strand 8
A
42 46parallel
Strand 9
A
19 24parallel
Strand 10
A
19 24first strand
Back to list of sheets
Back to top of page

There are 10 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 24first strand
Strand 2
B
233 238parallel
Strand 3
B
212 216parallel
Strand 4
B
172 175parallel
Strand 5
B
147 152parallel
Strand 6
B
93 96parallel
Strand 7
B
70 74parallel
Strand 8
B
42 46parallel
Strand 9
B
19 24parallel
Strand 10
B
19 24first strand
Back to list of sheets
Back to top of page

There are 22 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
19 24first strand
Strand 2
C
233 238parallel
Strand 3
C
212 216parallel
Strand 4
C
172 175parallel
Strand 5
C
147 151parallel
Strand 6
C
93 96parallel
Strand 7
C
70 74parallel
Strand 8
C
42 46parallel
Strand 9
C
42 46first strand
Strand 10
C
19 24parallel
Strand 11
C
70 74first strand
Strand 12
C
42 46parallel
Strand 13
C
93 96first strand
Strand 14
C
70 74parallel
Strand 15
C
147 151first strand
Strand 16
C
93 96parallel
Strand 17
C
172 175first strand
Strand 18
C
147 151parallel
Strand 19
C
212 216first strand
Strand 20
C
172 175parallel
Strand 21
C
233 238first strand
Strand 22
C
19 24parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il