Analysis of interatomic Contacts of Structural Units in PDB entry:
2VX8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VX8 entry

There are 4 chains in PDB entry 2VX8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 21GLN 156
B
 SER 20LEU 157
C
 THR 21ALA 154
D
 THR 21LYS 158
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 2VX8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 32Right-handed alpha
Helix 2
2
A
67 77Right-handed alpha
Helix 3
3
A
114 134Right-handed alpha
Helix 4
4
A
135 139Right-handed 310
Helix 5
5
A
145 154Right-handed alpha
Helix 6
6
B
27 32Right-handed alpha
Helix 7
7
B
33 35Right-handed 310
Helix 8
8
B
41 44Right-handed 310
Helix 9
9
B
67 79Right-handed alpha
Helix 10
10
B
117 134Right-handed alpha
Helix 11
11
B
135 139Right-handed 310
Helix 12
12
B
145 157Right-handed alpha
Helix 13
13
C
27 32Right-handed alpha
Helix 14
14
C
33 35Right-handed 310
Helix 15
15
C
67 77Right-handed alpha
Helix 16
16
C
114 133Right-handed alpha
Helix 17
17
C
134 139Right-handed 310
Helix 18
18
C
146 153Right-handed alpha
Helix 19
19
D
27 32Right-handed alpha
Helix 20
20
D
67 79Right-handed alpha
Helix 21
21
D
117 134Right-handed alpha
Helix 22
22
D
135 140Right-handed alpha
Helix 23
23
D
145 156Right-handed alpha
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There are 4 sheets in PDB entry 2VX8. Click on sheet of interest to get list of strands forming it: AA, AB, CA, A,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 26first strand
Strand 2
B
84 90parallel
Strand 3
B
93 100anti-parallel
Strand 4
B
103 110anti-parallel
Strand 5
B
46 53anti-parallel
Strand 6
B
56 62anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 62first strand
Strand 2
A
48 53anti-parallel
Strand 3
A
103 110anti-parallel
Strand 4
A
93 100anti-parallel
Strand 5
A
84 90anti-parallel
Strand 6
B
24 26parallel
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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
24 26first strand
Strand 2
C
84 90parallel
Strand 3
C
93 100anti-parallel
Strand 4
C
103 110anti-parallel
Strand 5
C
48 53anti-parallel
Strand 6
C
56 62anti-parallel
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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
24 26first strand
Strand 2
D
84 90parallel
Strand 3
D
93 100anti-parallel
Strand 4
D
103 110anti-parallel
Strand 5
D
46 53anti-parallel
Strand 6
D
56 62anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il