Analysis of interatomic Contacts of Structural Units in PDB entry:
2VXC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VXC entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 2VXC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 537THR 778
B
 LEU 538THR 778
C
 GLN 140LEU 142
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 2VXC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
557 568Right-handed alpha
Helix 2
2
A
577 580Right-handed 310
Helix 3
3
A
598 604Right-handed 310
Helix 4
4
A
617 627Right-handed alpha
Helix 5
5
A
633 642Right-handed alpha
Helix 6
6
A
648 651Right-handed 310
Helix 7
7
A
677 685Right-handed alpha
Helix 8
8
A
713 727Right-handed alpha
Helix 9
9
A
762 773Right-handed alpha
Helix 10
10
B
557 568Right-handed alpha
Helix 11
11
B
577 580Right-handed 310
Helix 12
12
B
598 604Right-handed 310
Helix 13
13
B
617 627Right-handed alpha
Helix 14
14
B
633 642Right-handed alpha
Helix 15
15
B
648 651Right-handed 310
Helix 16
16
B
677 685Right-handed alpha
Helix 17
17
B
713 727Right-handed alpha
Helix 18
18
B
762 773Right-handed alpha
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There are 6 sheets in PDB entry 2VXC. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
571 572first strand
Strand 2
A
543 547parallel
Strand 3
A
606 610parallel
Strand 4
A
630 631parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
654 658first strand
Strand 2
A
663 666anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
730 734first strand
Strand 2
A
693 697parallel
Strand 3
A
744 746parallel
Strand 4
A
760 761parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
571 572first strand
Strand 2
B
543 547parallel
Strand 3
B
606 610parallel
Strand 4
B
630 631parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
591 592first strand
Strand 2
B
730 734anti-parallel
Strand 3
B
693 697parallel
Strand 4
B
744 746parallel
Strand 5
B
760 761parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
654 658first strand
Strand 2
B
663 666anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il