Analysis of interatomic Contacts of Structural Units in PDB entry:
2VXH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VXH entry

There are 6 chains in PDB entry 2VXH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 8ASP 248
B
 ILE 9ASP 248
C
 GLU 10ASP 248
D
 LYS 8ASP 248
E
 LYS 8ASP 248
F
 ILE 9ASP 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 2VXH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 15Right-handed alpha
Helix 2
2
A
31 34Right-handed 310
Helix 3
3
A
37 43Right-handed alpha
Helix 4
4
A
43 55Right-handed alpha
Helix 5
5
A
83 96Right-handed alpha
Helix 6
6
A
99 101Right-handed 310
Helix 7
7
A
124 134Right-handed alpha
Helix 8
8
A
152 158Right-handed alpha
Helix 9
9
A
159 172Right-handed alpha
Helix 10
10
A
174 179Right-handed 310
Helix 11
11
A
204 217Right-handed alpha
Helix 12
12
A
238 248Right-handed alpha
Helix 13
13
B
10 15Right-handed alpha
Helix 14
14
B
31 34Right-handed 310
Helix 15
15
B
37 43Right-handed alpha
Helix 16
16
B
43 55Right-handed alpha
Helix 17
17
B
83 96Right-handed alpha
Helix 18
18
B
99 101Right-handed 310
Helix 19
19
B
124 134Right-handed alpha
Helix 20
20
B
152 158Right-handed alpha
Helix 21
21
B
159 172Right-handed alpha
Helix 22
22
B
174 179Right-handed 310
Helix 23
23
B
204 217Right-handed alpha
Helix 24
24
B
238 248Right-handed alpha
Helix 25
25
C
10 15Right-handed alpha
Helix 26
26
C
31 36Right-handed 310
Helix 27
27
C
37 43Right-handed alpha
Helix 28
28
C
43 55Right-handed alpha
Helix 29
29
C
83 95Right-handed alpha
Helix 30
30
C
99 101Right-handed 310
Helix 31
31
C
124 134Right-handed alpha
Helix 32
32
C
152 158Right-handed alpha
Helix 33
33
C
159 172Right-handed alpha
Helix 34
34
C
174 179Right-handed 310
Helix 35
35
C
204 217Right-handed alpha
Helix 36
36
C
238 248Right-handed alpha
Helix 37
37
D
10 15Right-handed alpha
Helix 38
38
D
31 34Right-handed 310
Helix 39
39
D
37 43Right-handed alpha
Helix 40
40
D
43 55Right-handed alpha
Helix 41
41
D
83 96Right-handed alpha
Helix 42
42
D
99 101Right-handed 310
Helix 43
43
D
124 134Right-handed alpha
Helix 44
44
D
152 158Right-handed alpha
Helix 45
45
D
159 175Right-handed alpha
Helix 46
46
D
176 179Right-handed 310
Helix 47
47
D
204 216Right-handed alpha
Helix 48
48
D
238 248Right-handed alpha
Helix 49
49
E
10 15Right-handed alpha
Helix 50
50
E
31 34Right-handed 310
Helix 51
51
E
37 43Right-handed alpha
Helix 52
52
E
43 55Right-handed alpha
Helix 53
53
E
83 95Right-handed alpha
Helix 54
54
E
99 101Right-handed 310
Helix 55
55
E
124 134Right-handed alpha
Helix 56
56
E
152 158Right-handed alpha
Helix 57
57
E
159 172Right-handed alpha
Helix 58
58
E
174 179Right-handed 310
Helix 59
59
E
204 216Right-handed alpha
Helix 60
60
E
238 248Right-handed alpha
Helix 61
61
F
10 15Right-handed alpha
Helix 62
62
F
31 34Right-handed 310
Helix 63
63
F
37 43Right-handed alpha
Helix 64
64
F
43 55Right-handed alpha
Helix 65
65
F
83 96Right-handed alpha
Helix 66
66
F
99 101Right-handed 310
Helix 67
67
F
124 134Right-handed alpha
Helix 68
68
F
152 158Right-handed alpha
Helix 69
69
F
159 175Right-handed alpha
Helix 70
70
F
176 179Right-handed 310
Helix 71
71
F
204 216Right-handed alpha
Helix 72
72
F
238 248Right-handed alpha
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There are 6 sheets in PDB entry 2VXH. Click on sheet of interest to get list of strands forming it: AA, BA, CA, DA, EA, FA,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 29first strand
Strand 2
A
75 81anti-parallel
Strand 3
A
60 65anti-parallel
Strand 4
A
232 236anti-parallel
Strand 5
A
143 149anti-parallel
Strand 6
A
196 202anti-parallel
Strand 7
A
181 187anti-parallel
Strand 8
A
103 112anti-parallel
Strand 9
A
21 29anti-parallel
Strand 10
A
21 29first strand
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There are 10 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 29first strand
Strand 2
B
75 81anti-parallel
Strand 3
B
60 65anti-parallel
Strand 4
B
232 236anti-parallel
Strand 5
B
143 149anti-parallel
Strand 6
B
196 202anti-parallel
Strand 7
B
181 187anti-parallel
Strand 8
B
103 112anti-parallel
Strand 9
B
21 29anti-parallel
Strand 10
B
21 29first strand
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There are 22 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
21 29first strand
Strand 2
C
75 81anti-parallel
Strand 3
C
60 65anti-parallel
Strand 4
C
232 236anti-parallel
Strand 5
C
143 149anti-parallel
Strand 6
C
196 202anti-parallel
Strand 7
C
181 187anti-parallel
Strand 8
C
103 112anti-parallel
Strand 9
C
60 65first strand
Strand 10
C
75 81anti-parallel
Strand 11
C
75 81first strand
Strand 12
C
21 29anti-parallel
Strand 13
C
103 112anti-parallel
Strand 14
C
21 29anti-parallel
Strand 15
C
143 149first strand
Strand 16
C
196 202anti-parallel
Strand 17
C
181 187anti-parallel
Strand 18
C
103 112anti-parallel
Strand 19
C
196 202first strand
Strand 20
C
143 149anti-parallel
Strand 21
C
232 236anti-parallel
Strand 22
C
60 65anti-parallel
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There are 16 strands in DA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
21 29first strand
Strand 2
D
75 81anti-parallel
Strand 3
D
60 65anti-parallel
Strand 4
D
75 81anti-parallel
Strand 5
D
75 81first strand
Strand 6
D
21 29anti-parallel
Strand 7
D
103 112anti-parallel
Strand 8
D
21 29anti-parallel
Strand 9
D
143 149first strand
Strand 10
D
196 202anti-parallel
Strand 11
D
181 187anti-parallel
Strand 12
D
103 112anti-parallel
Strand 13
D
196 202first strand
Strand 14
D
143 149anti-parallel
Strand 15
D
232 236anti-parallel
Strand 16
D
60 65anti-parallel
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There are 16 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
21 29first strand
Strand 2
E
75 81anti-parallel
Strand 3
E
60 65anti-parallel
Strand 4
E
75 81anti-parallel
Strand 5
E
75 81first strand
Strand 6
E
21 29anti-parallel
Strand 7
E
103 112anti-parallel
Strand 8
E
21 29anti-parallel
Strand 9
E
143 149first strand
Strand 10
E
196 202anti-parallel
Strand 11
E
181 187anti-parallel
Strand 12
E
103 112anti-parallel
Strand 13
E
196 202first strand
Strand 14
E
143 149anti-parallel
Strand 15
E
232 236anti-parallel
Strand 16
E
60 65anti-parallel
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There are 16 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
21 29first strand
Strand 2
F
75 81anti-parallel
Strand 3
F
60 65anti-parallel
Strand 4
F
75 81anti-parallel
Strand 5
F
75 81first strand
Strand 6
F
21 29anti-parallel
Strand 7
F
103 112anti-parallel
Strand 8
F
21 29anti-parallel
Strand 9
F
143 149first strand
Strand 10
F
196 202anti-parallel
Strand 11
F
181 187anti-parallel
Strand 12
F
103 112anti-parallel
Strand 13
F
196 202first strand
Strand 14
F
143 149anti-parallel
Strand 15
F
232 236anti-parallel
Strand 16
F
60 65anti-parallel
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