Analysis of interatomic Contacts of Structural Units in PDB entry:
2VXM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VXM entry

There are 4 chains in PDB entry 2VXM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 82MET 354
B
 LYS 82CYS 338
C
 LYS 82TRP 339
D
 LYS 82ASP 348
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 2VXM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
84 89Right-handed alpha
Helix 2
2
A
90 94Right-handed 310
Helix 3
3
A
114 124Right-handed alpha
Helix 4
4
A
137 143Right-handed alpha
Helix 5
5
A
143 155Right-handed alpha
Helix 6
6
A
198 200Right-handed 310
Helix 7
7
A
201 213Right-handed alpha
Helix 8
8
A
213 218Right-handed alpha
Helix 9
9
A
235 239Right-handed 310
Helix 10
10
A
254 258Right-handed 310
Helix 11
11
A
287 307Right-handed alpha
Helix 12
12
A
314 327Right-handed alpha
Helix 13
13
A
335 338Right-handed 310
Helix 14
14
B
84 89Right-handed alpha
Helix 15
15
B
90 94Right-handed 310
Helix 16
16
B
114 124Right-handed alpha
Helix 17
17
B
141 155Right-handed alpha
Helix 18
18
B
201 213Right-handed alpha
Helix 19
19
B
214 217Right-handed 310
Helix 20
20
B
235 239Right-handed 310
Helix 21
21
B
287 307Right-handed alpha
Helix 22
22
B
315 327Right-handed alpha
Helix 23
23
C
84 88Right-handed 310
Helix 24
24
C
90 94Right-handed 310
Helix 25
25
C
114 125Right-handed alpha
Helix 26
26
C
137 143Right-handed alpha
Helix 27
27
C
143 155Right-handed alpha
Helix 28
28
C
201 213Right-handed alpha
Helix 29
29
C
213 218Right-handed alpha
Helix 30
30
C
235 239Right-handed 310
Helix 31
31
C
287 308Right-handed alpha
Helix 32
32
C
314 327Right-handed alpha
Helix 33
33
D
84 88Right-handed 310
Helix 34
34
D
114 126Right-handed alpha
Helix 35
35
D
143 155Right-handed alpha
Helix 36
36
D
198 213Right-handed alpha
Helix 37
37
D
214 217Right-handed 310
Helix 38
38
D
235 239Right-handed 310
Helix 39
39
D
248 251Right-handed 310
Helix 40
40
D
287 308Right-handed alpha
Helix 41
41
D
315 327Right-handed alpha
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There are 6 sheets in PDB entry 2VXM. Click on sheet of interest to get list of strands forming it: AA, AB, BA, CA, CB, A,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 108first strand
Strand 2
A
331 333parallel
Strand 3
A
242 246parallel
Strand 4
A
279 286anti-parallel
Strand 5
A
220 225anti-parallel
Strand 6
A
129 135parallel
Strand 7
A
161 167parallel
Strand 8
A
182 188parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 229first strand
Strand 2
A
349 350anti-parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 108first strand
Strand 2
B
331 333parallel
Strand 3
B
242 245parallel
Strand 4
B
283 286anti-parallel
Strand 5
B
220 224anti-parallel
Strand 6
B
129 135parallel
Strand 7
B
161 167parallel
Strand 8
B
182 188parallel
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There are 8 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
107 108first strand
Strand 2
C
331 333parallel
Strand 3
C
242 246parallel
Strand 4
C
279 286anti-parallel
Strand 5
C
220 225anti-parallel
Strand 6
C
129 135parallel
Strand 7
C
161 167parallel
Strand 8
C
182 183parallel
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There are 8 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
107 108first strand
Strand 2
C
331 333parallel
Strand 3
C
242 246parallel
Strand 4
C
279 286anti-parallel
Strand 5
C
220 225anti-parallel
Strand 6
C
129 135parallel
Strand 7
C
161 167parallel
Strand 8
C
186 188parallel
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There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
107 108first strand
Strand 2
D
331 333parallel
Strand 3
D
242 246parallel
Strand 4
D
279 286anti-parallel
Strand 5
D
220 224anti-parallel
Strand 6
D
129 135parallel
Strand 7
D
161 167parallel
Strand 8
D
182 188parallel
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