Analysis of interatomic Contacts of Structural Units in PDB entry:
2VXO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VXO entry

There are 2 chains in PDB entry 2VXO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 25GLU 693
B
 HIS 23GLU 693
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 2VXO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
37 48Right-handed alpha
Helix 2
2
A
60 68Right-handed alpha
Helix 3
3
A
90 94Right-handed 310
Helix 4
4
A
104 114Right-handed alpha
Helix 5
5
A
137 141Right-handed 310
Helix 6
6
A
198 208Right-handed alpha
Helix 7
7
A
218 235Right-handed alpha
Helix 8
8
A
246 260Right-handed alpha
Helix 9
9
A
261 263Right-handed 310
Helix 10
10
A
280 290Right-handed alpha
Helix 11
11
A
299 305Right-handed alpha
Helix 12
12
A
326 330Right-handed 310
Helix 13
13
A
332 355Right-handed alpha
Helix 14
14
A
376 383Right-handed alpha
Helix 15
15
A
386 390Right-handed 310
Helix 16
16
A
395 404Right-handed alpha
Helix 17
17
A
409 414Right-handed 310
Helix 18
18
A
415 426Right-handed alpha
Helix 19
19
A
429 434Right-handed alpha
Helix 20
20
A
441 446Right-handed 310
Helix 21
21
A
458 471Right-handed alpha
Helix 22
22
A
471 476Right-handed alpha
Helix 23
23
A
480 490Right-handed alpha
Helix 24
24
A
491 505Right-handed alpha
Helix 25
25
A
539 554Right-handed alpha
Helix 26
26
A
581 602Right-handed alpha
Helix 27
27
A
604 608Right-handed 310
Helix 28
28
A
623 627Right-handed 310
Helix 29
29
A
658 672Right-handed alpha
Helix 30
30
B
36 48Right-handed alpha
Helix 31
31
B
60 68Right-handed alpha
Helix 32
32
B
90 95Right-handed 310
Helix 33
33
B
104 114Right-handed alpha
Helix 34
34
B
137 141Right-handed 310
Helix 35
35
B
198 208Right-handed alpha
Helix 36
36
B
218 235Right-handed alpha
Helix 37
37
B
246 260Right-handed alpha
Helix 38
38
B
281 290Right-handed alpha
Helix 39
39
B
299 305Right-handed alpha
Helix 40
40
B
326 330Right-handed 310
Helix 41
41
B
332 355Right-handed alpha
Helix 42
42
B
358 360Right-handed 310
Helix 43
43
B
376 383Right-handed alpha
Helix 44
44
B
386 390Right-handed 310
Helix 45
45
B
395 404Right-handed alpha
Helix 46
46
B
409 414Right-handed 310
Helix 47
47
B
415 426Right-handed alpha
Helix 48
48
B
429 434Right-handed alpha
Helix 49
49
B
441 446Right-handed 310
Helix 50
50
B
458 471Right-handed alpha
Helix 51
51
B
471 478Right-handed alpha
Helix 52
52
B
480 490Right-handed alpha
Helix 53
53
B
491 505Right-handed alpha
Helix 54
54
B
539 554Right-handed alpha
Helix 55
55
B
581 602Right-handed alpha
Helix 56
56
B
604 608Right-handed 310
Helix 57
57
B
658 671Right-handed alpha
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There are 6 sheets in PDB entry 2VXO. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 56first strand
Strand 2
A
28 33parallel
Strand 3
A
71 76parallel
Strand 4
A
100 103parallel
Strand 5
A
184 187parallel
Strand 6
A
173 179anti-parallel
Strand 7
A
165 170anti-parallel
Strand 8
A
129 133anti-parallel
Strand 9
A
146 149anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 298first strand
Strand 2
A
265 271parallel
Strand 3
A
238 242parallel
Strand 4
A
362 365parallel
Strand 5
A
407 408parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
507 520first strand
Strand 2
A
523 534anti-parallel
Strand 3
A
557 563parallel
Strand 4
A
675 681anti-parallel
Strand 5
A
633 637parallel
Strand 6
A
613 616anti-parallel
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There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 56first strand
Strand 2
B
28 32parallel
Strand 3
B
71 75parallel
Strand 4
B
100 103parallel
Strand 5
B
184 187parallel
Strand 6
B
173 179anti-parallel
Strand 7
B
165 170anti-parallel
Strand 8
B
128 133anti-parallel
Strand 9
B
146 150anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
294 298first strand
Strand 2
B
265 271parallel
Strand 3
B
238 242parallel
Strand 4
B
362 365parallel
Strand 5
B
407 408parallel
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There are 6 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
507 520first strand
Strand 2
B
523 534anti-parallel
Strand 3
B
557 563parallel
Strand 4
B
675 681anti-parallel
Strand 5
B
633 637parallel
Strand 6
B
613 616anti-parallel
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