Analysis of interatomic Contacts of Structural Units in PDB entry:
2VXP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VXP entry

There are 2 chains in PDB entry 2VXP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 502LEU 632
B
 MET 502LEU 632
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2VXP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
504 510Right-handed alpha
Helix 2
2
A
515 526Right-handed alpha
Helix 3
3
A
527 533Right-handed alpha
Helix 4
4
A
543 550Right-handed alpha
Helix 5
5
A
551 560Right-handed alpha
Helix 6
6
A
561 572Right-handed alpha
Helix 7
7
B
504 512Right-handed alpha
Helix 8
8
B
515 525Right-handed alpha
Helix 9
9
B
527 532Right-handed alpha
Helix 10
10
B
543 550Right-handed alpha
Helix 11
11
B
551 560Right-handed alpha
Helix 12
12
B
561 570Right-handed alpha
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There are 4 sheets in PDB entry 2VXP. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
537 542first strand
Strand 2
A
623 628parallel
Strand 3
A
615 620anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
587 590first strand
Strand 2
A
596 602anti-parallel
Strand 3
A
605 608anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
573 574first strand
Strand 2
B
537 542anti-parallel
Strand 3
B
623 628parallel
Strand 4
B
618 619anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
587 590first strand
Strand 2
B
596 601anti-parallel
Strand 3
B
606 608anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il