Analysis of interatomic Contacts of Structural Units in PDB entry:
2VXR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VXR entry

There is 1 chain in PDB entry 2VXR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 868LEU 1298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 2VXR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
945 947Right-handed 310
Helix 2
2
A
948 955Right-handed alpha
Helix 3
3
A
1075 1087Right-handed alpha
Helix 4
4
A
1122 1125Right-handed 310
Helix 5
5
A
1267 1273Right-handed alpha
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There are 9 sheets in PDB entry 2VXR. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
879 882first strand
Strand 2
A
871 876anti-parallel
Strand 3
A
1061 1070anti-parallel
Strand 4
A
905 909anti-parallel
Strand 5
A
897 899anti-parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
879 882first strand
Strand 2
A
871 876anti-parallel
Strand 3
A
1061 1070anti-parallel
Strand 4
A
933 940anti-parallel
Strand 5
A
1010 1016anti-parallel
Strand 6
A
1021 1026anti-parallel
Strand 7
A
1029 1035anti-parallel
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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
889 892first strand
Strand 2
A
916 919anti-parallel
Strand 3
A
1047 1053anti-parallel
Strand 4
A
956 964anti-parallel
Strand 5
A
967 974anti-parallel
Strand 6
A
977 983anti-parallel
Strand 7
A
989 995anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
927 928first strand
Strand 2
A
1042 1043anti-parallel
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There are 6 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1202 1205first strand
Strand 2
A
1186 1191anti-parallel
Strand 3
A
1174 1178anti-parallel
Strand 4
A
1150 1155anti-parallel
Strand 5
A
1105 1110anti-parallel
Strand 6
A
1286 1289anti-parallel
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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1202 1205first strand
Strand 2
A
1186 1191anti-parallel
Strand 3
A
1212 1213anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1116 1121first strand
Strand 2
A
1126 1131anti-parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1134 1136first strand
Strand 2
A
1141 1143anti-parallel
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There are 5 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1198 1200first strand
Strand 2
A
1261 1266anti-parallel
Strand 3
A
1239 1247anti-parallel
Strand 4
A
1230 1236anti-parallel
Strand 5
A
1217 1219anti-parallel
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