Analysis of interatomic Contacts of Structural Units in PDB entry:
2VY0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VY0 entry

There are 2 chains in PDB entry 2VY0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 34GLY 297
B
 VAL 35GLY 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 2VY0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
71 75Right-handed 310
Helix 2
2
A
76 81Right-handed 310
Helix 3
3
A
159 164Right-handed alpha
Helix 4
4
A
194 198Right-handed 310
Helix 5
5
A
242 248Right-handed alpha
Helix 6
6
B
71 75Right-handed 310
Helix 7
7
B
76 81Right-handed 310
Helix 8
8
B
159 164Right-handed alpha
Helix 9
9
B
194 198Right-handed 310
Helix 10
10
B
242 248Right-handed alpha
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There are 7 sheets in PDB entry 2VY0. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 41first strand
Strand 2
A
44 52anti-parallel
Strand 3
A
282 296anti-parallel
Strand 4
A
98 110anti-parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 41first strand
Strand 2
A
44 52anti-parallel
Strand 3
A
282 296anti-parallel
Strand 4
A
135 142anti-parallel
Strand 5
A
217 224anti-parallel
Strand 6
A
227 232anti-parallel
Strand 7
A
235 241anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 66first strand
Strand 2
A
122 124anti-parallel
Strand 3
A
258 266anti-parallel
Strand 4
A
130 131anti-parallel
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There are 7 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 66first strand
Strand 2
A
122 124anti-parallel
Strand 3
A
258 266anti-parallel
Strand 4
A
149 157anti-parallel
Strand 5
A
170 176anti-parallel
Strand 6
A
183 189anti-parallel
Strand 7
A
199 204anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 41first strand
Strand 2
B
44 52anti-parallel
Strand 3
B
281 296anti-parallel
Strand 4
B
98 110anti-parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 41first strand
Strand 2
B
44 52anti-parallel
Strand 3
B
281 296anti-parallel
Strand 4
B
135 142anti-parallel
Strand 5
B
217 224anti-parallel
Strand 6
B
227 232anti-parallel
Strand 7
B
235 241anti-parallel
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There are 10 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 66first strand
Strand 2
B
122 124anti-parallel
Strand 3
B
258 266anti-parallel
Strand 4
B
130 131anti-parallel
Strand 5
B
258 266anti-parallel
Strand 6
B
199 204first strand
Strand 7
B
183 189anti-parallel
Strand 8
B
170 176anti-parallel
Strand 9
B
149 157anti-parallel
Strand 10
B
258 266anti-parallel
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