Analysis of interatomic Contacts of Structural Units in PDB entry:
2VY3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VY3 entry

There are 2 chains in PDB entry 2VY3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 12LYS 302
B
 GLU 12LYS 302
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 2VY3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 19Right-handed 310
Helix 2
2
A
35 55Right-handed alpha
Helix 3
3
A
64 77Right-handed alpha
Helix 4
4
A
116 133Right-handed alpha
Helix 5
5
A
134 137Right-handed 310
Helix 6
6
A
140 159Right-handed alpha
Helix 7
7
A
164 180Right-handed alpha
Helix 8
8
A
185 189Right-handed 310
Helix 9
9
A
190 204Right-handed alpha
Helix 10
10
A
207 219Right-handed alpha
Helix 11
11
A
219 233Right-handed alpha
Helix 12
12
A
280 282Right-handed 310
Helix 13
13
A
283 289Right-handed alpha
Helix 14
14
B
15 19Right-handed 310
Helix 15
15
B
35 57Right-handed alpha
Helix 16
16
B
64 77Right-handed alpha
Helix 17
17
B
117 133Right-handed alpha
Helix 18
18
B
134 137Right-handed 310
Helix 19
19
B
140 157Right-handed alpha
Helix 20
20
B
164 180Right-handed alpha
Helix 21
21
B
185 189Right-handed 310
Helix 22
22
B
190 204Right-handed alpha
Helix 23
23
B
207 219Right-handed alpha
Helix 24
24
B
219 234Right-handed alpha
Helix 25
25
B
280 282Right-handed 310
Helix 26
26
B
283 289Right-handed alpha
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There are 4 sheets in PDB entry 2VY3. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 15first strand
Strand 2
A
98 99parallel
Strand 3
A
91 92anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 247first strand
Strand 2
A
274 278parallel
Strand 3
A
265 269anti-parallel
Strand 4
A
253 261anti-parallel
Strand 5
A
295 299anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 92first strand
Strand 2
B
98 99anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 247first strand
Strand 2
B
274 278parallel
Strand 3
B
265 269anti-parallel
Strand 4
B
253 258anti-parallel
Strand 5
B
295 299anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il