Analysis of interatomic Contacts of Structural Units in PDB entry:
2VY6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VY6 entry

There is 1 chain in PDB entry 2VY6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 538SER 741
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 2VY6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
540 556Right-handed alpha
Helix 2
2
A
556 567Right-handed alpha
Helix 3
3
A
567 573Right-handed alpha
Helix 4
4
A
574 576Right-handed 310
Helix 5
5
A
577 584Right-handed alpha
Helix 6
6
A
588 606Right-handed alpha
Helix 7
7
A
611 619Right-handed alpha
Helix 8
8
A
620 624Right-handed 310
Helix 9
9
A
701 705Right-handed 310
Helix 10
10
A
711 716Right-handed 310
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There are 3 sheets in PDB entry 2VY6. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
635 640first strand
Strand 2
A
643 648anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
656 658first strand
Strand 2
A
664 667anti-parallel
Strand 3
A
670 674anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
694 699first strand
Strand 2
A
730 736anti-parallel
Strand 3
A
721 727anti-parallel
Strand 4
A
708 709parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il