Analysis of interatomic Contacts of Structural Units in PDB entry:
2VYE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VYE entry

There are 3 chains in PDB entry 2VYE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 9LEU 441
B
 GLU 1007VAL 1427
C
 T 2001 T 2009
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 2VYE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 27Right-handed alpha
Helix 2
2
A
28 38Right-handed alpha
Helix 3
3
A
39 43Right-handed 310
Helix 4
4
A
45 61Right-handed alpha
Helix 5
5
A
66 78Right-handed alpha
Helix 6
6
A
84 95Right-handed alpha
Helix 7
7
A
98 100Right-handed 310
Helix 8
8
A
101 132Right-handed alpha
Helix 9
9
A
135 152Right-handed alpha
Helix 10
10
A
161 179Right-handed alpha
Helix 11
11
A
190 198Right-handed alpha
Helix 12
12
A
214 230Right-handed alpha
Helix 13
13
A
243 257Right-handed alpha
Helix 14
14
A
259 265Right-handed alpha
Helix 15
15
A
269 285Right-handed alpha
Helix 16
16
A
297 312Right-handed alpha
Helix 17
17
A
321 325Right-handed 310
Helix 18
18
A
334 353Right-handed alpha
Helix 19
19
A
364 370Right-handed alpha
Helix 20
20
A
376 384Right-handed alpha
Helix 21
21
A
385 390Right-handed alpha
Helix 22
22
B
1013 1027Right-handed alpha
Helix 23
23
B
1028 1035Right-handed alpha
Helix 24
24
B
1039 1043Right-handed 310
Helix 25
25
B
1045 1062Right-handed alpha
Helix 26
26
B
1066 1077Right-handed alpha
Helix 27
27
B
1084 1096Right-handed alpha
Helix 28
28
B
1102 1132Right-handed alpha
Helix 29
29
B
1135 1152Right-handed alpha
Helix 30
30
B
1164 1178Right-handed alpha
Helix 31
31
B
1190 1196Right-handed alpha
Helix 32
32
B
1215 1231Right-handed alpha
Helix 33
33
B
1243 1257Right-handed alpha
Helix 34
34
B
1269 1285Right-handed alpha
Helix 35
35
B
1297 1312Right-handed alpha
Helix 36
36
B
1321 1325Right-handed 310
Helix 37
37
B
1336 1354Right-handed alpha
Helix 38
38
B
1364 1374Right-handed alpha
Helix 39
39
B
1383 1390Right-handed alpha
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There are 2 sheets in PDB entry 2VYE. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 290first strand
Strand 2
A
234 239parallel
Strand 3
A
314 320parallel
Strand 4
A
357 361parallel
Strand 5
A
205 209parallel
Strand 6
A
392 397parallel
Strand 7
A
410 419anti-parallel
Strand 8
A
428 432anti-parallel
Strand 9
A
437 439anti-parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1288 1292first strand
Strand 2
B
1235 1239parallel
Strand 3
B
1316 1320parallel
Strand 4
B
1357 1362parallel
Strand 5
B
1205 1210parallel
Strand 6
B
1392 1394parallel
Strand 7
B
1416 1419anti-parallel
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