Analysis of interatomic Contacts of Structural Units in PDB entry:
2VYF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VYF entry

There are 2 chains in PDB entry 2VYF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 8ASN 436
B
 GLU 1007THR 1426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 2VYF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 27Right-handed alpha
Helix 2
2
A
27 38Right-handed alpha
Helix 3
3
A
39 43Right-handed 310
Helix 4
4
A
45 59Right-handed alpha
Helix 5
5
A
68 77Right-handed alpha
Helix 6
6
A
85 95Right-handed alpha
Helix 7
7
A
101 131Right-handed alpha
Helix 8
8
A
135 151Right-handed alpha
Helix 9
9
A
163 174Right-handed alpha
Helix 10
10
A
192 197Right-handed alpha
Helix 11
11
A
215 230Right-handed alpha
Helix 12
12
A
243 253Right-handed alpha
Helix 13
13
A
272 283Right-handed alpha
Helix 14
14
A
297 312Right-handed alpha
Helix 15
15
A
336 352Right-handed alpha
Helix 16
16
A
385 390Right-handed alpha
Helix 17
17
B
1013 1027Right-handed alpha
Helix 18
18
B
1027 1036Right-handed alpha
Helix 19
19
B
1039 1043Right-handed 310
Helix 20
20
B
1045 1062Right-handed alpha
Helix 21
21
B
1068 1074Right-handed alpha
Helix 22
22
B
1079 1084Right-handed alpha
Helix 23
23
B
1084 1095Right-handed alpha
Helix 24
24
B
1101 1132Right-handed alpha
Helix 25
25
B
1135 1152Right-handed alpha
Helix 26
26
B
1162 1178Right-handed alpha
Helix 27
27
B
1191 1197Right-handed alpha
Helix 28
28
B
1216 1229Right-handed alpha
Helix 29
29
B
1243 1256Right-handed alpha
Helix 30
30
B
1272 1285Right-handed alpha
Helix 31
31
B
1298 1310Right-handed alpha
Helix 32
32
B
1335 1353Right-handed alpha
Helix 33
33
B
1385 1390Right-handed alpha
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There are 2 sheets in PDB entry 2VYF. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 291first strand
Strand 2
A
234 239parallel
Strand 3
A
315 320parallel
Strand 4
A
357 362parallel
Strand 5
A
205 210parallel
Strand 6
A
392 397parallel
Strand 7
A
411 419anti-parallel
Strand 8
A
425 430anti-parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1287 1291first strand
Strand 2
B
1234 1239parallel
Strand 3
B
1316 1320parallel
Strand 4
B
1357 1362parallel
Strand 5
B
1205 1210parallel
Strand 6
B
1394 1395parallel
Strand 7
B
1415 1416anti-parallel
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