Analysis of interatomic Contacts of Structural Units in PDB entry:
2VYO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VYO entry

There is 1 chain in PDB entry 2VYO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 15LYS 220
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2VYO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 52Right-handed alpha
Helix 2
2
A
66 69Right-handed 310
Helix 3
3
A
70 79Right-handed alpha
Helix 4
4
A
88 92Right-handed 310
Helix 5
5
A
94 98Right-handed 310
Helix 6
6
A
99 119Right-handed alpha
Helix 7
7
A
135 144Right-handed alpha
Helix 8
8
A
155 159Right-handed 310
Helix 9
9
A
161 172Right-handed alpha
Helix 10
10
A
187 190Right-handed 310
Helix 11
11
A
192 206Right-handed alpha
Helix 12
12
A
211 216Right-handed alpha
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There are 3 sheets in PDB entry 2VYO. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
133 134anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 149first strand
Strand 2
A
124 126parallel
Strand 3
A
82 86parallel
Strand 4
A
56 59parallel
Strand 5
A
27 33parallel
Strand 6
A
208 209parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 149first strand
Strand 2
A
124 126parallel
Strand 3
A
82 86parallel
Strand 4
A
56 59parallel
Strand 5
A
27 33parallel
Strand 6
A
180 185parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il