Analysis of interatomic Contacts of Structural Units in PDB entry:
2VYR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VYR entry

There are 12 chains in PDB entry 2VYR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 25ALA 110
B
 ASN 25ALA 110
C
 ASN 25ALA 110
D
 ASN 25ALA 110
E
 GLU 1SER 124
F
 GLU 1SER 124
G
 GLU 1SER 123
H
 GLU 1ALA 125
I
 GLU 1SER 124
J
 GLU 1SER 124
K
 GLU 1SER 124
L
 GLU 1SER 124
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 2VYR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 40Right-handed alpha
Helix 2
2
A
48 63Right-handed alpha
Helix 3
3
A
79 86Right-handed alpha
Helix 4
4
A
95 105Right-handed alpha
Helix 5
5
B
30 40Right-handed alpha
Helix 6
6
B
48 63Right-handed alpha
Helix 7
7
B
79 86Right-handed alpha
Helix 8
8
B
95 105Right-handed alpha
Helix 9
9
C
30 40Right-handed alpha
Helix 10
10
C
48 63Right-handed alpha
Helix 11
11
C
79 86Right-handed alpha
Helix 12
12
C
95 105Right-handed alpha
Helix 13
13
D
30 40Right-handed alpha
Helix 14
14
D
48 63Right-handed alpha
Helix 15
15
D
79 86Right-handed alpha
Helix 16
16
D
95 105Right-handed alpha
Helix 17
17
E
28 32Right-handed 310
Helix 18
18
E
87 91Right-handed 310
Helix 19
19
F
28 32Right-handed 310
Helix 20
20
F
74 76Right-handed 310
Helix 21
21
F
87 91Right-handed 310
Helix 22
22
G
28 32Right-handed 310
Helix 23
23
G
62 65Right-handed 310
Helix 24
24
G
74 76Right-handed 310
Helix 25
25
G
87 91Right-handed 310
Helix 26
26
H
28 32Right-handed 310
Helix 27
27
H
74 76Right-handed 310
Helix 28
28
H
87 91Right-handed 310
Helix 29
29
I
28 32Right-handed 310
Helix 30
30
I
74 76Right-handed 310
Helix 31
31
I
87 91Right-handed 310
Helix 32
32
J
28 32Right-handed 310
Helix 33
33
J
62 65Right-handed 310
Helix 34
34
J
87 91Right-handed 310
Helix 35
35
K
28 32Right-handed 310
Helix 36
36
K
87 91Right-handed 310
Helix 37
37
L
28 32Right-handed 310
Helix 38
38
L
62 65Right-handed 310
Helix 39
39
L
74 76Right-handed 310
Helix 40
40
L
87 91Right-handed 310
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There are 40 sheets in PDB entry 2VYR. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB, EA, EB, EC, ED, FA, FB, FC, FD, GA, GB, GC, GD, HA, HB, HC, HD, IA, IB, IC, ID, JA, JB, JC, JD, KA, KB, KC, KD, LA, LB, LC, LD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 29first strand
Strand 2
A
106 108anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
70 75anti-parallel
Strand 3
A
89 91anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 29first strand
Strand 2
B
106 108anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 67first strand
Strand 2
B
70 75anti-parallel
Strand 3
B
89 91anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
27 29first strand
Strand 2
C
106 108anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
73 75first strand
Strand 2
C
89 91anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
27 29first strand
Strand 2
D
106 108anti-parallel
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There are 3 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
66 67first strand
Strand 2
D
70 75anti-parallel
Strand 3
D
89 91anti-parallel
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There are 4 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 7first strand
Strand 2
E
18 25anti-parallel
Strand 3
E
78 83anti-parallel
Strand 4
E
68 73anti-parallel
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There are 4 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 12first strand
Strand 2
E
118 122parallel
Strand 3
E
92 98anti-parallel
Strand 4
E
113 114anti-parallel
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There are 6 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 12first strand
Strand 2
E
118 122parallel
Strand 3
E
92 98anti-parallel
Strand 4
E
34 39anti-parallel
Strand 5
E
46 51anti-parallel
Strand 6
E
58 60anti-parallel
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There are 2 strands in ED sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
113 114first strand
Strand 2
E
92 98anti-parallel
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There are 4 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
3 7first strand
Strand 2
F
18 25anti-parallel
Strand 3
F
78 83anti-parallel
Strand 4
F
68 73anti-parallel
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There are 4 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
10 12first strand
Strand 2
F
118 122parallel
Strand 3
F
92 98anti-parallel
Strand 4
F
113 114anti-parallel
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There are 6 strands in FC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
10 12first strand
Strand 2
F
118 122parallel
Strand 3
F
92 98anti-parallel
Strand 4
F
34 39anti-parallel
Strand 5
F
46 51anti-parallel
Strand 6
F
58 60anti-parallel
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There are 2 strands in FD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
113 114first strand
Strand 2
F
92 98anti-parallel
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There are 4 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
3 7first strand
Strand 2
G
18 25anti-parallel
Strand 3
G
78 83anti-parallel
Strand 4
G
68 73anti-parallel
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There are 4 strands in GB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
11 12first strand
Strand 2
G
118 122parallel
Strand 3
G
92 98anti-parallel
Strand 4
G
113 114anti-parallel
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There are 6 strands in GC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
11 12first strand
Strand 2
G
118 122parallel
Strand 3
G
92 98anti-parallel
Strand 4
G
34 39anti-parallel
Strand 5
G
46 51anti-parallel
Strand 6
G
58 60anti-parallel
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There are 2 strands in GD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
113 114first strand
Strand 2
G
92 98anti-parallel
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There are 4 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
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There are 4 strands in HB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
118 122parallel
Strand 3
H
92 98anti-parallel
Strand 4
H
113 114anti-parallel
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There are 6 strands in HC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
118 122parallel
Strand 3
H
92 98anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
46 51anti-parallel
Strand 6
H
58 60anti-parallel
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There are 2 strands in HD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
113 114first strand
Strand 2
H
92 98anti-parallel
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There are 4 strands in IA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
3 7first strand
Strand 2
I
18 25anti-parallel
Strand 3
I
78 83anti-parallel
Strand 4
I
68 73anti-parallel
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There are 4 strands in IB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
10 12first strand
Strand 2
I
118 122anti-parallel
Strand 3
I
92 99anti-parallel
Strand 4
I
111 114anti-parallel
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There are 6 strands in IC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
10 12first strand
Strand 2
I
118 122anti-parallel
Strand 3
I
92 99anti-parallel
Strand 4
I
34 39anti-parallel
Strand 5
I
45 51anti-parallel
Strand 6
I
58 60anti-parallel
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There are 2 strands in ID sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
111 114first strand
Strand 2
I
92 99anti-parallel
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There are 4 strands in JA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
3 7first strand
Strand 2
J
18 25anti-parallel
Strand 3
J
78 83anti-parallel
Strand 4
J
68 73anti-parallel
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There are 4 strands in JB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
10 12first strand
Strand 2
J
118 122anti-parallel
Strand 3
J
92 99anti-parallel
Strand 4
J
111 114anti-parallel
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There are 6 strands in JC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
10 12first strand
Strand 2
J
118 122anti-parallel
Strand 3
J
92 99anti-parallel
Strand 4
J
34 40anti-parallel
Strand 5
J
44 51anti-parallel
Strand 6
J
58 60anti-parallel
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There are 2 strands in JD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
111 114first strand
Strand 2
J
92 99anti-parallel
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There are 4 strands in KA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
3 7first strand
Strand 2
K
18 25anti-parallel
Strand 3
K
78 83anti-parallel
Strand 4
K
68 73anti-parallel
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There are 4 strands in KB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
11 12first strand
Strand 2
K
118 122anti-parallel
Strand 3
K
92 99anti-parallel
Strand 4
K
111 114anti-parallel
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There are 6 strands in KC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
11 12first strand
Strand 2
K
118 122anti-parallel
Strand 3
K
92 99anti-parallel
Strand 4
K
34 39anti-parallel
Strand 5
K
45 51anti-parallel
Strand 6
K
58 60anti-parallel
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There are 2 strands in KD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
111 114first strand
Strand 2
K
92 99anti-parallel
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There are 4 strands in LA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
3 7first strand
Strand 2
L
18 25anti-parallel
Strand 3
L
78 83anti-parallel
Strand 4
L
68 73anti-parallel
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There are 4 strands in LB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
11 12first strand
Strand 2
L
118 122anti-parallel
Strand 3
L
92 99anti-parallel
Strand 4
L
111 114anti-parallel
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There are 6 strands in LC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
11 12first strand
Strand 2
L
118 122anti-parallel
Strand 3
L
92 99anti-parallel
Strand 4
L
34 39anti-parallel
Strand 5
L
45 51anti-parallel
Strand 6
L
58 60anti-parallel
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There are 2 strands in LD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
111 114first strand
Strand 2
L
92 99anti-parallel
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